Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0944 ATGTTGGAGGTCCGTGGTTGGGAAGTTAATGAGGTGAATTCAATAGGAAGCAACTTGGCAGTTAATGAAGTGCATTCAATAGGAAGCAACTTGGCAGTTCGAACTTCCTACCATCTCATACAACATTTATTTCAATTGGATATTACGATTTTCATGTCCATGTTACAAAATATGGAACCACTTGACATGGAAGTAGTTGAGTTGGAAGCAGTGGAGTTGGAAGGAGTTCCTTCTTGTGAGTTCAACACTGATGACGTGGATAATATGGACAATAATGTTCCAAAACTGCAGATGTCTTTCGATTCAATAGAACAGGTGAAAAGTTTTTATAGAGACTATGCCGTCAGTTGTGGTTTTGCTGTTCGGATAAGGAGCTCAAAGAAAAATAACAACAATCAATTGACGTTCATGAAATTAGTGTGTTCTCGGCAAGGGAAGTACATTTCTTCCATTTCTCCAGAGTTCAAAACTCAGCCCAATCAAAGAAACGAATGCCCTACTGAAATCACAGTTTCTCTTAAAGAAGGAAGATGGTATGTAAGGACAGTTGTCACCGAACACAACCATGACATGTGTCCGAAGAACTCAAATCTTATTCGTGGTAATAGAAAACTAAATATGCATTTGAAGCACACTCTTACCATGAATGATGATGCTGGTGTGCGCATTAACAAAAGCTTCATATCATTGGTTAAATATGCTGGTGGATATGAAAACATACAGTTCATTGAATGTGACGCAAGAAATTATATTGGGCAGCAGCGAAGGAGTTTTTGTAAGGATAGAGATGGGCAAACACTTCCAAAATACTTTTCAAGAATGAGAGAATTGAACAACGAATTCTTCTATGAGATGGAAATGGACGAGCATAACAGAATTTGTAGTTACGAAAATGCCCTACGACAAAAGGCCCAAAAAGAAAATGAAGCTGATTTCGTGTCATTGAATTCCACAATACCATGTGGATCTCAATCTCTTATTGAAAGACAATATCAAATGGAGTACACACAGGCTAAATTTGTGGAAGTTCAAAAGGAATTCAGATCAAGGATGAATTGCTTCATTAAGAATATGTCCACAAAAGGTTGTAGGACTACATACAATGTCAAAGAAGAGTTCATTTGGGAGGGGCAATGTGGTTCAAAATTCTATGTTGTTGATTATGATTCTCTCTCAACCGACATTCATTGCAGTTGCAAACTTTTTGAGTTTAGAGGAATCTTGTGTCGACATTGCTTACTGGTCCTAGGTCAGGAAGATGTGCGTACTGTACCAACAAAACATGTTTTACGCTGTTGGAGCAAAAATGTACGTAGAAGACACACTTTGATAACATCATCTTACAGCAACCACACTCAAGAACCTAAGATGCAGATATACCAAACTTTGTGTAAATGTTTCTATGACATCGTGGAGGAGGCATGTCATTCTGAGACTGCTTCGAAGAAGTTGCTTTCCGAGTTAAACTCTATAGGAAGAAGTTTAGGGGTAAGAACATCACCGACATTGATGTTGGTCAACGATGATGGATTTGACATGCATGGAAATCCCCCTTCTAGTGAAGAAGGTCGACCACCTTGTGAAGTTGATGGCTTGGTTGTTCGCAGTCTTGTCTCTGTCAAACGCAAAGGGCGACCACGAACAAAGAGAATGCAATCAACACTTGAAAAATTAACAAAGAAGAAAAAGTCGCATGGTGCTAAAAATAAACATACAACGAATCATAGTGAAAGAACTGATTGTCATGTTACAAACATCCATAATGTTGAGGACCTTGGAAGTCAACAGATGCTTGAATCTCAAGTTTCACAATCGGGATTCATGTCTTTATTGACATCTGCACACTACAATAATGATAATGTTGACTTGTCACCATGTACTTATACACACCTTTAG 1896 0.3834 MLEVRGWEVNEVNSIGSNLAVNEVHSIGSNLAVRTSYHLIQHLFQLDITIFMSMLQNMEPLDMEVVELEAVELEGVPSCEFNTDDVDNMDNNVPKLQMSFDSIEQVKSFYRDYAVSCGFAVRIRSSKKNNNNQLTFMKLVCSRQGKYISSISPEFKTQPNQRNECPTEITVSLKEGRWYVRTVVTEHNHDMCPKNSNLIRGNRKLNMHLKHTLTMNDDAGVRINKSFISLVKYAGGYENIQFIECDARNYIGQQRRSFCKDRDGQTLPKYFSRMRELNNEFFYEMEMDEHNRICSYENALRQKAQKENEADFVSLNSTIPCGSQSLIERQYQMEYTQAKFVEVQKEFRSRMNCFIKNMSTKGCRTTYNVKEEFIWEGQCGSKFYVVDYDSLSTDIHCSCKLFEFRGILCRHCLLVLGQEDVRTVPTKHVLRCWSKNVRRRHTLITSSYSNHTQEPKMQIYQTLCKCFYDIVEEACHSETASKKLLSELNSIGRSLGVRTSPTLMLVNDDGFDMHGNPPSSEEGRPPCEVDGLVVRSLVSVKRKGRPRTKRMQSTLEKLTKKKKSHGAKNKHTTNHSERTDCHVTNIHNVEDLGSQQMLESQVSQSGFMSLLTSAHYNNDNVDLSPCTYTHL* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0944 631 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 294 462 IPR031052 GO:0006355
Vra6g0944 631 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 87 293 IPR031052 GO:0006355
Vra6g0944 631 MobiDBLite consensus disorder prediction 541 580 - -
Vra6g0944 631 Pfam SWIM zinc finger 387 416 IPR007527 GO:0008270
Vra6g0944 631 Pfam FAR1 DNA-binding domain 108 192 IPR004330 -
Vra6g0944 631 PANTHER OS03G0843700 PROTEIN 294 462 - -
Vra6g0944 631 PANTHER OS03G0843700 PROTEIN 87 293 - -
Vra6g0944 631 ProSiteProfiles Zinc finger SWIM-type profile. 384 420 IPR007527 GO:0008270
Vra6g0944 631 SMART 26again6 395 422 IPR006564 GO:0008270
Vra6g0944 631 Coils Coil 296 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0944 Vra-Chr6 10422771 10425825 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra6g0944 FAR1 9.3e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0944 - - vra:106763416 1268.06