Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0941 ATGAAAGTAATAAACTTTTCTGGTAGCATAGCAAAACCCAGTTTTTTGATTGGCCAATCGGAAATGCCTATTCTAACATTTGGTCATTGTAAGCTGAGTGCTACCCTAGCTCTACGGTTATCACGAGATTGCATTAGAAGAATGGAGTTGATTACGAAACTTCAGTATTCTGTTGCTGATAGGGCATTTAGTTCTGGTTCGGTGTATTCGCCGTCGCCGGAATCGGAGTCGGGTAGAATGAATCGCCGACAGGGAGGTTCCTCATCGATATATAGCCGTCCTAGTTTATCAGAAATGAAGAAAGAGAAGGCTGCACTAAGGTTAAAGGTTTATGAGTTCTTGAAGACAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACTGTTGATGTTATGAGGGAGCGCATAGATTTTCTTCATAGTTTGGGGCTTACAATTGAAGACATCAACAATTATCCACTTGTTCTTGGCTGCAGCGTCAAGAAGAACATGATTCCTGTGCTTGACTATCTTGGTAAATTGGGAGTGAGGAAATCCTCCATTACGTTGTTCTTGCAGAGATACCCACAAGTTCTCCATGCTAGTGTTGTTGTGGATCTTATGCCGGTGGTTAATTATCTTAAGGGGATGGATATCAAGACTGAGGATATTCCTCGTGTTCTTGAGAGATACCCTGAAGTGCTTGGCTTCAAACTTGAGGGAACCATGAGCACATCGGTTGCTTATTTGATTGGAATTGGTGTAGGAAGAAGACAAATTGGAGGTGTCTTAACTAAATATCCAGAGATTTTGGGTATGCGTGTTGGTAGAATCATTAAGCCTTTTGTGGAATATCTGGAAAGTTTGGGGATTCGAAGGTTAGCCATTGCCAGATTAATAGAGCAACGACCTTATATTCTTGGGTTTGGGCTGGATGAGAAGGTGAAACCAAACGTTAAATCCCTTGAAGATTTTAGTGTTAGACGAACATCACTTCCTTCTATAATTGCTCAGTATCCTGACATCATTGGAACTGATTTAAATTCAAAGCTTTTCAATCAGAGAATTATACTCAATTCGGTGCTTGAATTGGATACAGAGGAATTTGCCCGAGTTGTTGAGAAGATGCCACAGGTAGTTAGCCTCATTAAGGGACCTATGCTGAAGCATGTTGATTTTCTTAAGGATTGTGGCTTTTCATTGCCTCAGATAAGGAAGATGATTGTTGCATGTCCTCAATTACTTGCGTTAAACATTGACATTATGAAACTTAGCTTTGATTACTTCCAAATGAAGATGAAAAGGCCTTTGGAAGATTTGGTTACATTCCCTGCATTCTTCACATATGCTTTGGAGTCAACTATAAAGCCTAGGCATGTGAGGGTTGCCAAGAAAGGGTTAAAGTGTTCTTTGTCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGACATGGAAGAAATGGAAATGGAAATGGAATCATCATTTGACATGGATTCACTAACACAACCAAGGAGTGATGATGAGTCAGATTTTGACTATGAAGACAGTGACGAAGATGATGAGTAG 1584 0.4009 MKVINFSGSIAKPSFLIGQSEMPILTFGHCKLSATLALRLSRDCIRRMELITKLQYSVADRAFSSGSVYSPSPESESGRMNRRQGGSSSIYSRPSLSEMKKEKAALRLKVYEFLKTIGIVPDELDGLELPVTVDVMRERIDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSSITLFLQRYPQVLHASVVVDLMPVVNYLKGMDIKTEDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRQIGGVLTKYPEILGMRVGRIIKPFVEYLESLGIRRLAIARLIEQRPYILGFGLDEKVKPNVKSLEDFSVRRTSLPSIIAQYPDIIGTDLNSKLFNQRIILNSVLELDTEEFARVVEKMPQVVSLIKGPMLKHVDFLKDCGFSLPQIRKMIVACPQLLALNIDIMKLSFDYFQMKMKRPLEDLVTFPAFFTYALESTIKPRHVRVAKKGLKCSLSWMLNCSNEKFEQRMDYDTIDMEEMEMEMESSFDMDSLTQPRSDDESDFDYEDSDEDDE* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0941 527 MobiDBLite consensus disorder prediction 497 527 - -
Vra6g0941 527 PANTHER CGI-12 PROTEIN-RELATED 48 513 IPR003690 GO:0003690|GO:0006355
Vra6g0941 527 Pfam mTERF 172 480 IPR003690 GO:0003690|GO:0006355
Vra6g0941 527 Gene3D Transcription termination factor 3, mitochondrial 140 276 IPR038538 -
Vra6g0941 527 Gene3D Transcription termination factor 3, mitochondrial 277 489 IPR038538 -
Vra6g0941 527 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF4, CHLOROPLASTIC 48 513 - -
Vra6g0941 527 MobiDBLite consensus disorder prediction 65 92 - -
Vra6g0941 527 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Vra6g0941 527 SMART mt_12 367 397 IPR003690 GO:0003690|GO:0006355
Vra6g0941 527 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Vra6g0941 527 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Vra6g0941 527 SMART mt_12 87 120 IPR003690 GO:0003690|GO:0006355
Vra6g0941 527 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Vra6g0941 527 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Vra6g0941 527 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Vra6g0941 527 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0941 Vra-Chr6 10400383 10404315 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra6g0941 mTERF 1.6e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0941 K15032 - gmx:100785223 829.32