Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0940 ATGGGTGCAGTTGTCGAGTGTTACCCGCCGCCGCGTACGGCGGTGCTGTCTCTCAATACGCTGCCGCTGGGCTTCCGTTTCCGTCCCACCGATGAAGAGCTTATTGATTACTACCTGCGCTCCAAGATCAACGGAAACGGGGACGATGTCTGGGTTATCCGTGAGATTGATGTCTGCAAATGGGAGCCTTGGGATTTGCCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGGAAGTATCCCAATGGGCACAGGTTGAACCGAGCTACGAACCATGGGTATTGGAAAGCAACAGGGAAGGATCGAAAGATTAAGTCTGGTTCTGCTTTGATCGGAATGAAGAAGACTCTTGTTTTCTATACTGGTCGTGCACCGAAGGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGGCCTACCCTGAAGGAGCTCGATGGTACCAATCCTGGACAGAATCCATATGTCCTTTGTCGGTTATTTAAGAAACATGATGAGAGTCTTGAAGGTTCAAATGGTGAGGATGTGGAGCGGACTGCTTCAACCCCTATGACTGCCAATCACTCTCCAGATGAAATACAATCTGATTCATCTCTGGATCCAGCATCTTCCTCACAGATCACTGAGGGTGAAAAGCCGCTGACAGTTATCCATGAGAACTCTGAGGAAGCAATATCCAACATTATAACTGCAGTTGACTCCCATAGTGATGGATGTGATGCTCCTGCTGCACAAAATCAAATTGTAAAACCAGCTGCTGAGGATCAGCCATTTAACTTTGAGGATTTTTATGACCCAACAAACCAGCAATTAGATGACAAATTATTCTCCCCAGTCCATGCTCATTTCCCACCGGAAATTTACTATCAATCAGAACTTCAGTATGGTACAAATAACAATATGTCCGACTTTTTTGACTCGGTTAACTGGGACGCCATCTCCTATGATACTAGCAGTCTAGAGCTAGGCTCATCCTTCCTCAATGTCAGGGACAATGGATCTGGCAGTGACTCAGATGTGGAAATGACCAATATGACGAATCTGCAGGCATTACATGGTTATCCTAAGGAGGCAGTTGAGCAGAAGAGTAATGTAGGATTATTTCAGAACACTCCTCAGATGGCTTTCTCAAACGATGGTTGTATGGGTCAGGTAGATGATCCGATCAAGAATAGTGGGCAACTAAGAGACTTTGATACGTTTGTTAATGGTGATACTGGAATCAGAATAAGGACTCGTCCAGGACGAAACGAACAGCCAAATATGAATGGAATGGTACAATCACAAGGCATTGCACCAAGGAGAATACGATTACTTGTCGACCGACAGTTTGCTTCCGAGAAGGCGCCGAAAGATGGAAGTTGTGCTTCAGTCCCAGAAGACCATAATTCAAAAACCACCATTTCTAGGGAGTGGAATGCTTCGGAAAACCATGCTACCGATGATAGTTCCGGCAGCTGTAACGATGTCGATGAAGCCGAGAAGGAATCTCCCGAGTCATCTGACTTGAGAAAGATTACTCGGCAGCATATTGCAACTGCAGAATCCTTGATCTCAAAAGAGAGCAGAAGGGGCCATCACACTTCAAAGGTTTTGTCTAACCGTGGGATGTGGTCTTATGTTCTTGCAGTTTCTGCAACTGTGTTGGTTTCAGTAACAGTGATTGTTAATATATGGGCGTATGTGAGATCTTAA 1719 0.4567 MGAVVECYPPPRTAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGSALIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKHDESLEGSNGEDVERTASTPMTANHSPDEIQSDSSLDPASSSQITEGEKPLTVIHENSEEAISNIITAVDSHSDGCDAPAAQNQIVKPAAEDQPFNFEDFYDPTNQQLDDKLFSPVHAHFPPEIYYQSELQYGTNNNMSDFFDSVNWDAISYDTSSLELGSSFLNVRDNGSGSDSDVEMTNMTNLQALHGYPKEAVEQKSNVGLFQNTPQMAFSNDGCMGQVDDPIKNSGQLRDFDTFVNGDTGIRIRTRPGRNEQPNMNGMVQSQGIAPRRIRLLVDRQFASEKAPKDGSCASVPEDHNSKTTISREWNASENHATDDSSGSCNDVDEAEKESPESSDLRKITRQHIATAESLISKESRRGHHTSKVLSNRGMWSYVLAVSATVLVSVTVIVNIWAYVRS* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0940 572 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Vra6g0940 572 MobiDBLite consensus disorder prediction 496 513 - -
Vra6g0940 572 MobiDBLite consensus disorder prediction 419 438 - -
Vra6g0940 572 MobiDBLite consensus disorder prediction 182 218 - -
Vra6g0940 572 MobiDBLite consensus disorder prediction 467 494 - -
Vra6g0940 572 MobiDBLite consensus disorder prediction 455 513 - -
Vra6g0940 572 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
Vra6g0940 572 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 430 - -
Vra6g0940 572 MobiDBLite consensus disorder prediction 175 218 - -
Vra6g0940 572 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 16 430 - -
Vra6g0940 572 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
Vra6g0940 572 SUPERFAMILY NAC domain 14 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0940 Vra-Chr6 10392531 10396347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0940 14 217 NAC Transcription Factor Family AT4G35580 66.176 4.92e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra6g0940 NAM 5.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0940 - - vun:114194396 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0940 6 10392531 10396347 Vra10g0108 10 3332031 3335670 PCT