Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0935 ATGGGAGAGGGAGAGAACATAGAAGTGGAAACAGAAGCAGAATCCGAAGCATCATCGTCCTGGAACCTCGGAAAACACACTCAGATAATCGAGCTCTCGGAGAAGTTGTTGGACGGGAACCTTAGCGCCAAGATTGAGGCTGCAAGGGAGATAAGGAAGATGGTTCGGAAATCATCGTCCCCGTCGAAGATACGTGCTAAGCTCGCCGCAGCAGGTGTGATTGAACCCCTCGTGCTGATGCTGTCGTCTTCCAACATCGAAGCTCGCCAATCCTCTCTTCTCGCTCTCCTCAACCTCGCTGTTCGCAATGAACGAAACAAGGTCAAAATAGTGACAGATGGTGCCATGCCTCCACTGGTGGAGCTCCTCAAGATGAAAAATAGCGGTATACGAGAATTAGCTACAGCTGCAGTCTTGTCACTCTCGGCTGCTGCATCCAACAAGCCCATTATTGCTGCTTCTGGAGCCGCACCTTTCCTTGTCCAGATTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAGCACTCCATAATCTTTCTACCAGCAACGAGAATTCCATTGAACTTCTTGATCCAAGTGCTGTTTTCCCTCTGATCAACCTTCTCAAAGAATGCAAGAAGTATTCCAAGTTTGCGGAAAAAGCCACATCACTGCTTGAAATCCTTTCCAACTCTGAAGAAGGGCGAACTGCAATCTCAATTGCAGATGGTGGAATCTTAACCCTAGTTGAGACAGTTGAAGATGGATCACTTGTCAGCACAGAACATGCTGTAGGAACTCTGCTATCTTTATGCCGAAGCTGCCGGGATAAATACCGGGAACTGATTCTTAAAGAAGGAGCGATTCCGGGTCTGCTTCGTCTAACCGTGGAGGGCACGGCTGAAGCTCAAGATAGAGCTCGTGTGCTTCTGGATTTGCTCAGAGATTCTCCCCCAGAAAAGAGACTAACCTCATCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAACGAGTAGATGGAGCAGATAAAGCTGCTGAAACTGCCAAACAGTTGTTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAAATGCATCCAGCATAGGGCTGCATCTTGCACTCCTTCTATTCCTTCCACTTGA 1137 0.4723 MGEGENIEVETEAESEASSSWNLGKHTQIIELSEKLLDGNLSAKIEAAREIRKMVRKSSSPSKIRAKLAAAGVIEPLVLMLSSSNIEARQSSLLALLNLAVRNERNKVKIVTDGAMPPLVELLKMKNSGIRELATAAVLSLSAAASNKPIIAASGAAPFLVQILKSGSVQGKVDAVTALHNLSTSNENSIELLDPSAVFPLINLLKECKKYSKFAEKATSLLEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGTLLSLCRSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGADKAAETAKQLLQDMVQRSMEHSMKCIQHRAASCTPSIPST* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0935 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 156 IPR000225 GO:0005515
Vra6g0935 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 72 114 IPR000225 GO:0005515
Vra6g0935 378 SUPERFAMILY ARM repeat 34 335 IPR016024 -
Vra6g0935 378 MobiDBLite consensus disorder prediction 1 20 - -
Vra6g0935 378 Pfam Armadillo/beta-catenin-like repeat 103 142 IPR000225 GO:0005515
Vra6g0935 378 Gene3D - 153 368 IPR011989 -
Vra6g0935 378 Gene3D - 28 152 IPR011989 -
Vra6g0935 378 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 344 - -
Vra6g0935 378 PANTHER U BOX DOMAIN-CONTAINING 14 344 - -
Vra6g0935 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 240 IPR000225 GO:0005515
Vra6g0935 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 155 197 IPR000225 GO:0005515
Vra6g0935 378 SMART arm_5 228 269 IPR000225 GO:0005515
Vra6g0935 378 SMART arm_5 61 101 IPR000225 GO:0005515
Vra6g0935 378 SMART arm_5 185 227 IPR000225 GO:0005515
Vra6g0935 378 SMART arm_5 102 143 IPR000225 GO:0005515
Vra6g0935 378 SMART arm_5 144 184 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0935 Vra-Chr6 10251176 10259639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0935 27 312 U-box Gene Family AT3G54790 37.979 5.87e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0935 K08332 - gmx:100782472 632.869