Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra6g0931 | ATGGGCCTCTCAAGTCTTCCAGCACCATCTGAAGGAGTATTATGTGTTCTTCTGGTGAACACTGTATTGTCAATTTCCATATTCAAGGGCATTGTTAGGACAATCCTACACATTGTTGGAATCCATCTTTCATCATCGACCACTTCACCCTCTTCACCAGATCCCTACCAAGCGCCACCTGAGTCATTTGAATTCCATCTAAGTCCCTCTGAGAGTTACATTGAAGAGTTCAGAAGCCGGACACCAACACTCAGGTTTGACAGTGTGTGTTGCTGCAAACGACCTGAACATGACTGTTCTGTATGTCTCACTCAGTTCGAACCGGAATCTGAGATTAACCGTTTATCGTGTGGCCATCTCTTCCACAAAGCTTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACATGCCCACTTTGCAGGACTCCCTTGATGCCTGAAGATGACACACCTTGCTTTCAGTAA | 465 | 0.4581 | MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSTTSPSSPDPYQAPPESFEFHLSPSESYIEEFRSRTPTLRFDSVCCCKRPEHDCSVCLTQFEPESEINRLSCGHLFHKACLEKWLDYWNITCPLCRTPLMPEDDTPCFQ* | 155 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra6g0931 | 154 | SUPERFAMILY | RING/U-box | 98 | 147 | - | - | |
| Vra6g0931 | 154 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
| Vra6g0931 | 154 | PANTHER | - | 1 | 152 | IPR044249 | - | |
| Vra6g0931 | 154 | SMART | ring_2 | 99 | 140 | IPR001841 | - | |
| Vra6g0931 | 154 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - | |
| Vra6g0931 | 154 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 149 | IPR013083 | - | |
| Vra6g0931 | 154 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 152 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra6g0931 | Vra-Chr6 | 10082120 | 10084079 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra6g0931 | 1 | 148 | C3H Transcription Factor Family | AT2G04240 | 64.935 | 1.18e-60 | 183 |