Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0928 ATGAAGAAAACACCATCTCCCAAATTTCAGCAATCTAGCCAAAGGAAACAGAATCATAATCACCAAGTTCTTGCTACTGTCAATGATGAAGAGAGGCACAATCCTAAGACCGCTTCTGCACTCAAATCTTTCAAGAATGCTGTGAAGAAATGTGCACAGATTTTTTCATTGTTTCTCCTTGGCAAAAGAAAATCAGCCTCTTATGTTGTTGGAAATGATGACAGAAAAAATACATCTAAGGTCAGAGGGGTGGCATCATCATCAACTGATTTATCTTCGGAGAGTACCACCAAGAATTCATCAAAATGGAAGTTTTCTTCTTCCTACGCTTCATCTAGCACTGCAAGTGGACAACTTGGAATTGGCAACTTCTCCTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCACCAGATAATGAAATTGGACAAGGTGGCTTTGGAACTGTCTACAGGGGAAAACTAAATGATGGATCTATGGTTGCCGTAAAGCGTGCCAAAAAGGAAGTAATACACAGTCACTTACACGAGTTCAAGAATGAAATATACACCTTGTCTCAAATTGAGCATCGGAATCTGGTGAGGTTGTATGGATATTTGGAACATGGAAATGAGAAGATCATTGTTGTTGAATATGTTGGTAATGGCAACCTTCGAGAGCACCTTGATGGGATTCGGGGAGAAGGATTAGAAATGGGGGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAATAACTTACCTTCATATGTACGCAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCTTAGTCACTGAGAACCTAAAGGCAAAAGTGGCAGATTTTGGTTTTGCACGGTTATCTGATGATCCTACAGCAACTCATATTTCAACTCAAGTAAAAGGAACAGCTGGTTACATGGACCCTGAGTATCTCAGAACATATCAACTCACTGAAAAAAGTGATGTTTATTCCTTTGGTGTTTTGCTTGTAGAAATTGTGACAGGAAGACATCCAATTGAACCAAAGAGACCCCTTGATGAAAGAGTGACAATCAGATGGGCAATGAAGATGCTGAAACAAGGGGATGCTGTATTTGCCATGGACCCTAGGCTGAGAAGAAATCCAGCCTCCATCAAGGCAGTAAAACAGGTTCTCAAGCTAGCTTTACAATGCCTTGCTCCTTTGAAACAATCACGGCCACCTATGAAGAACTGTGCAGAGGTTCTGTGGGAAATCCGCAAAAGTTTTAGAGATGAAACCGATTCTGATCATCCTTCTCTTCCTTCACACCATTCTGCAGATTTTCCTCAAAGGGAAAAGAATAAGCATACAGTGTTTGGCATTGAAGATGATGACAGCTATAAATTTGTCTCTGTACCTAATCATATTCGTTCATAA 1395 0.3993 MKKTPSPKFQQSSQRKQNHNHQVLATVNDEERHNPKTASALKSFKNAVKKCAQIFSLFLLGKRKSASYVVGNDDRKNTSKVRGVASSSTDLSSESTTKNSSKWKFSSSYASSSTASGQLGIGNFSFEEIYKSTAKFSPDNEIGQGGFGTVYRGKLNDGSMVAVKRAKKEVIHSHLHEFKNEIYTLSQIEHRNLVRLYGYLEHGNEKIIVVEYVGNGNLREHLDGIRGEGLEMGERLDIAIDVAHAITYLHMYADNPIIHRDIKASNILVTENLKAKVADFGFARLSDDPTATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEIVTGRHPIEPKRPLDERVTIRWAMKMLKQGDAVFAMDPRLRRNPASIKAVKQVLKLALQCLAPLKQSRPPMKNCAEVLWEIRKSFRDETDSDHPSLPSHHSADFPQREKNKHTVFGIEDDDSYKFVSVPNHIRS* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0928 464 PANTHER OS01G0253100 PROTEIN 1 445 IPR045271 GO:0004714|GO:0006468
Vra6g0928 464 MobiDBLite consensus disorder prediction 73 100 - -
Vra6g0928 464 SMART serkin_6 136 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0928 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Vra6g0928 464 Pfam Protein tyrosine and serine/threonine kinase 139 408 IPR001245 GO:0004672|GO:0006468
Vra6g0928 464 MobiDBLite consensus disorder prediction 81 100 - -
Vra6g0928 464 MobiDBLite consensus disorder prediction 419 439 - -
Vra6g0928 464 Gene3D Phosphorylase Kinase; domain 1 94 212 - -
Vra6g0928 464 Gene3D Transferase(Phosphotransferase) domain 1 213 430 - -
Vra6g0928 464 PANTHER OS02G0821400 PROTEIN 1 445 - -
Vra6g0928 464 CDD STKc_IRAK 142 411 - -
Vra6g0928 464 ProSiteProfiles Protein kinase domain profile. 136 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0928 464 MobiDBLite consensus disorder prediction 1 24 - -
Vra6g0928 464 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Vra6g0928 464 SUPERFAMILY Protein kinase-like (PK-like) 113 411 IPR011009 -
Vra6g0928 464 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0928 Vra-Chr6 10051494 10056572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0928 108 411 Receptor kinase-like Gene Family AT1G79620 44.695 9.32e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vra6g0928 PK_Tyr_Ser-Thr 3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0928 - - gmx:100811511 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0928 6 10051494 10056572 Vra6g0299 6 2228800 2233539 PCT