Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0915 ATGGATATTGTGTTAAGAGGTGAAAATGGCTTTCAAATTTATGGTTATGATGTTATGAACCCTCCTTTGACATCCACAGACACAGATCAATTCTTATGTGGCCACTTCCTTCATCATCAACAACAGACAAAGAACAATGATGTTTGTGCTTTTTCTGAGTGGACAAACATCAACCAAAACCTTAAACTGTGTCTGGATGATATGCAAGTTTCATGTAAGAACACGAAAGTGGTGGGAAGGAGAAGGAAGAAACAATCTTCTGTGTCTTGGATCAAAGGACAGTGGAATAAGGAAGAGGACAGGAAACTGATAAGGTTGGTGAAACAACATGGTGATAAAAAGTGGGCTGAAATAGCTGAGAAGTTGGAAGGAAGAGTTGGCAAACAATGTCGAGAAAGATGGAACAATCATTTGCGTCCTGATATTAAGAAAGATAGCTGGAGCGAAGAAGAAGAAAGAATACTGGTAGACATGCATGCTCGGCTTGGAAATCGTTGGTGCGAGATGGCAAAATGTCTTCCAGGAAGATCAGAGAATGCCATAAAGAACCACTGGAATGCGACCAAAAGGAGACAGAATTCAAAGAGAAAGCACAAGAAAACAAAGACCTCTAATGGAAAACCTCATTCTTCCATACTCGAAGACTACATCAGAAGCAAGACCATCATCACCACAAATTCTGCACCCTCACAGGATAACAATGCACCTAACCCTTTCAACCATCTCTTCTATCAACCTTTTCCTTTTCCTAACCAACCACAACCACTCTTCATGCACTCTAATTTGGATCACTGGAACATCATCAATGTTGATCATGTTGATCAGACTCTGCAATACCCAGATAATATGCACTTCAATGATACTTTCTTTCCCCCAGCTAATTACCTTCCTTCGGATTTTTATGTCTCTCCCTTGTTCAACGTAGCATCTGGGTATGGAAATCAAGTAAAAGGAGAGGAGATCTGGTAG 969 0.4045 MDIVLRGENGFQIYGYDVMNPPLTSTDTDQFLCGHFLHHQQQTKNNDVCAFSEWTNINQNLKLCLDDMQVSCKNTKVVGRRRKKQSSVSWIKGQWNKEEDRKLIRLVKQHGDKKWAEIAEKLEGRVGKQCRERWNNHLRPDIKKDSWSEEEERILVDMHARLGNRWCEMAKCLPGRSENAIKNHWNATKRRQNSKRKHKKTKTSNGKPHSSILEDYIRSKTIITTNSAPSQDNNAPNPFNHLFYQPFPFPNQPQPLFMHSNLDHWNIINVDHVDQTLQYPDNMHFNDTFFPPANYLPSDFYVSPLFNVASGYGNQVKGEEIW* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0915 322 CDD SANT 146 189 IPR001005 -
Vra6g0915 322 PANTHER MYB PROTEIN-RELATED 39 231 - -
Vra6g0915 322 PANTHER MYB PROTEIN-RELATED 266 315 - -
Vra6g0915 322 SUPERFAMILY Homeodomain-like 89 185 IPR009057 -
Vra6g0915 322 MobiDBLite consensus disorder prediction 188 205 - -
Vra6g0915 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 142 IPR017930 -
Vra6g0915 322 CDD SANT 95 138 IPR001005 -
Vra6g0915 322 Gene3D - 91 143 - -
Vra6g0915 322 ProSiteProfiles Myb-like domain profile. 92 138 IPR001005 -
Vra6g0915 322 MobiDBLite consensus disorder prediction 187 210 - -
Vra6g0915 322 Gene3D - 145 212 - -
Vra6g0915 322 SMART sant 91 140 IPR001005 -
Vra6g0915 322 SMART sant 143 191 IPR001005 -
Vra6g0915 322 Pfam Myb-like DNA-binding domain 95 152 - -
Vra6g0915 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 143 193 IPR017930 -
Vra6g0915 322 ProSiteProfiles Myb-like domain profile. 139 189 IPR001005 -
Vra6g0915 322 PANTHER MYB TRANSCRIPTION FACTOR 266 315 - -
Vra6g0915 322 PANTHER MYB TRANSCRIPTION FACTOR 39 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0915 Vra-Chr6 9767244 9770603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0915 83 219 MYB Transcription Factor Family AT5G58850 66.897 2.06e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra6g0915 Myb_DNA-bind_6 2.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0915 K09422 - vra:106763407 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0376 10 8989156 8991843 Vra6g0915 6 9767244 9770603 PCT