Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0908 ATGGATCTACCTGATCCTTACGGCGAGGACGTCACCATGGAGGACTTTTGTTGCACGTCTGCAATTTCCACTTCTTCAGCTTACGGCGAGGACGTCACAGTGCTAAATTACTTGTTTTGGAAAATTGGGTGTAACGAGATTGGCGCGTGGGTCTTGAATTCCATGTTTGTGTGCAAGAGTATCTTCGAGAGGTTAGACGCGTCAGTGGTCACGGTTGCGGCTGCGGCGGCCAACAAATCCCTTTTAAAGGAGCCTCAATACCAAGGCGTGAGAAAGAGACCGTGGGGGAGGTTCGTAGTAGAGATCAGAGACCCGTTGAAGAAAGCCAAGGTTTGGTTAGAAACCTTTGATTCTGTCGAGGAAGCTGCTCGAGCCTATGACACCATCGCACAGACTCTCCGATGTCAGAGGCGGTGGATGTTTTGA 426 0.5023 MDLPDPYGEDVTMEDFCCTSAISTSSAYGEDVTVLNYLFWKIGCNEIGAWVLNSMFVCKSIFERLDASVVTVAAAAANKSLLKEPQYQGVRKRPWGRFVVEIRDPLKKAKVWLETFDSVEEAARAYDTIAQTLRCQRRWMF* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0908 141 Gene3D AP2/ERF domain 86 140 IPR036955 GO:0003700|GO:0006355
Vra6g0908 141 CDD AP2 85 134 IPR001471 GO:0003700|GO:0006355
Vra6g0908 141 SUPERFAMILY DNA-binding domain 86 134 IPR016177 GO:0003677
Vra6g0908 141 PANTHER ETHYLENE RESPONSE FACTOR 70 135 - -
Vra6g0908 141 SMART rav1_2 86 137 IPR001471 GO:0003700|GO:0006355
Vra6g0908 141 ProSiteProfiles AP2/ERF domain profile. 86 141 IPR001471 GO:0003700|GO:0006355
Vra6g0908 141 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 70 135 - -
Vra6g0908 141 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Vra6g0908 141 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Vra6g0908 141 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0908 Vra-Chr6 9668559 9669694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0908 67 137 AP2-EREBP Transcription Factor Family AT3G20310 60.563 2.51e-24 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra6g0908 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0908 K09286 - gmx:100820249 102.834