Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0887 ATGGTTCGTGTTAGAGGTGACGGAGTCAAGAATCCTTGTGTTGATGGTCTTTTCTCTGTTGTTATGGTGGCCAAGCAGTTCAAAATTCGTTTCCCTTTTGATGTTAGATCGTGGTATGGGAGTACTCCAACTCTCGCGCTGTTTGGAGGCTCACACGGCCTTCTTTTCTTGGTTTTGCTGATAACTTCTGTGTACTCCTTTTTCTTCGATAAACAAGTCACAGAGAAACCAGATGCATATGGTCTGGTTTCGTGTGCAGCATTTGCTATTATGTCACTAGGCTTGTCAAGACTCAGTCACTTTGGATTTGAGGTCGATCTTGCCAGAACTGGGTATGCTGGAATCCATGTCAACGATGACGTAGTCATCGAAATTGGTTCACACTCAGAAACAAGCCGAAATTTTTCAAGAGTTGGTTCACCTCAAACTATTACCACAGTTGGTAATTCCCTCGGCATGCCGCAAGACGTTGTTGTCTCGGAAGGAGACGAAGATTCAGTATTCGTGGTCACTCAAGGAAAAGATGACAGTAACAAAAGTATCATGGCACGATTCATGGAATGTATAGAGGTGCTTAAGAAGGAGAATAAGACCCTTATCAGCACAATTTCCAAACACGTAGATGGATACCTTAAAGCTAGTGTGGTCAACAAGATTCCAACGGTGGAACTCCATGCTGACAACAACTTGGTGGTTGATACATTGCCTGCTGGAATCATCAATGACCTTCACGAAGCCGTGTGGCTGATACTGGCTGAAGGGTTTGAGGAGGATTGTTGCAGAGTATACTATACTTGCCGAAGGGAGTTTCTGAAAAAGTGTTTATGGACTTTTGGGTTGCAAATGCAAGAGCTTTGTATGGAGGACATTGATAAGATGGAAAAGATTCAGAGTTGGTTAACAAAGGTTTTGTATGTAATTGATAATGTACTCCTTCCCAATGAAAGGACACTCTGTGATCGCGTCTTTAAAGGGGTCTCTTCCGCTGGGGACTTTGCTTTCACTGTGGTTTGTAGAGAATTGAATATTTGTTTGGTTCGCATTGCCAATCATTTGGCAACTATTATGGAGTGTGAAAATTTTACATATTATGAGGGTGGTGAGCTTCATCCTAATATATGTGAATTGATGTACAAAATTCGTTATGTTTGCATACAGAGGGATAATAAATCTAGGCAAGTATTAGAAGGATACACCATGTTTGATAAGGAGGGAAAGCTTTCACCGTCTGGGAATGTGGCCAGGATAACAGCCCTGATAGAGAGAATTTTGGAAGTGGAGTCCAAAAAATACCATAACCCTTCTCTGGGATATGTTTTCATCATGAACCATCTGAATTTCATAGAACTAGAAGCAAAGTTCTATGGATTGGTTCCTATTTTTAGTCAAGATTGGCTCCGGAAAATCACAACAAAATTTCAGCAAAACCTCGAACTCTATCTGAGAAGCTCGTGGAATAAGATTGTGGACTTTCTAAAGTTTGATATTTGTGAATCAGAGACTAGTGTTGCGATTGGGTTACTGAAAGACAGGATAAATTCGTTCAACGAACACTTTGATGAGATATGCAATGTTCAGTCTACTTGGTTTGTGTTTGATGAAGAGTTAAGAAAACATATTGTAAAATCCATAGAAAACATATTGTTGCCAGCATATGGAAACTTCATTGGAAAGTTGCATAATTTTCTTGGCAAACACAGTTATAATTATATTAAGTATGGAATGTTTGACGTCCAAGATCGAGTCCGCAATCTGTTTGTTGTGATGAACAATAAGAATCTGTATCTGAAGCACAAGTGGAAGACATCCAAGCGCTTGCATTGA 1824 0.4013 MVRVRGDGVKNPCVDGLFSVVMVAKQFKIRFPFDVRSWYGSTPTLALFGGSHGLLFLVLLITSVYSFFFDKQVTEKPDAYGLVSCAAFAIMSLGLSRLSHFGFEVDLARTGYAGIHVNDDVVIEIGSHSETSRNFSRVGSPQTITTVGNSLGMPQDVVVSEGDEDSVFVVTQGKDDSNKSIMARFMECIEVLKKENKTLISTISKHVDGYLKASVVNKIPTVELHADNNLVVDTLPAGIINDLHEAVWLILAEGFEEDCCRVYYTCRREFLKKCLWTFGLQMQELCMEDIDKMEKIQSWLTKVLYVIDNVLLPNERTLCDRVFKGVSSAGDFAFTVVCRELNICLVRIANHLATIMECENFTYYEGGELHPNICELMYKIRYVCIQRDNKSRQVLEGYTMFDKEGKLSPSGNVARITALIERILEVESKKYHNPSLGYVFIMNHLNFIELEAKFYGLVPIFSQDWLRKITTKFQQNLELYLRSSWNKIVDFLKFDICESETSVAIGLLKDRINSFNEHFDEICNVQSTWFVFDEELRKHIVKSIENILLPAYGNFIGKLHNFLGKHSYNYIKYGMFDVQDRVRNLFVVMNNKNLYLKHKWKTSKRLH* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0887 607 Pfam Exo70 exocyst complex subunit 410 580 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vra6g0887 607 Gene3D Exocyst complex component Exo70 166 360 - -
Vra6g0887 607 Gene3D Exocyst complex component Exo70 361 593 - -
Vra6g0887 607 PANTHER PROTEIN, PUTATIVE-RELATED 56 587 - -
Vra6g0887 607 SUPERFAMILY Cullin repeat-like 188 586 IPR016159 -
Vra6g0887 607 PANTHER EXOCYST COMPLEX PROTEIN EXO70 56 587 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0887 Vra-Chr6 9329634 9334421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0887 218 586 EXO70 exocyst subunit family AT5G58430 34.529 1.13e-66 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0887 - - var:108336660 958.747