Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0884 ATGTCATCTGCAATGCATCTTGTGATGCTAATGTATGGTTACATTGGTGTTGTTGCTGCAAAGAATCTGGTTGAATCTTCAAAATTCTCATCCATACTTGTTTTTGGAGATTCTACTGTTGATCCTGGTAATAACAATTATCTGCTAACTATTTCTAAGGCTAATTATTTTCCTTATGGCATAGATTTCCCAGGGCATGTAGCAACAGGGAGATTCAGCAATGGAAAATTGGTATCTGATTTTCTTGCTTCTGCCTTGAATATCAAAGACACTGTCCCTCCTTTTCTAAATCCAGACCTAAGTGACCAAGAACTTCTAACAGGAGTTTCTTTTGCCTCGGGAGAATCTGGTATTGATGACTTCACTGCATCTCTCACAAATGTTTTATCGATGGACCAACAGCTTCAATATTTCAAAGCTTACACAATGAAGCTCAAGCAAATCGTAGGAGAAGATCAAGCCATGCAAAGACTTCAACATGCTCTTGTTCTCATCTCTGTCGGTACTAACGATTTCATTTTGAATTTCCATGACTTCCCCTCTAGAAGACTCATGTTCATCACCATTGATGCTTACCAAGATTATTTGCTTGATAAGTTTGACGTCATGATTAAGGAGCTGTACGACGAAGGATGTAGGAACATTGGTGTGGCTGGGCTTCCTCCTCTTGGTTGTGTGCCTCTTCAAATGTCCCTAAAATTCAAAATTGATAGGCAATGTTTGGTGCATCAGAATGCTGACAGTGAGAAGTATAATCAGAAGTTGGCTCAAAGACTCTCGCTATTACAAGCTACACTCCCTCAAAGCAAAATTGTATATGGAGATTTGTACCACCCACTGCTCAACCTTTATACTCATCCTCAGCATTATGGTATGGAGGTAACAAACAGAGGGTGTTGTGGATCAGGTTATTTGGAAGTGATTGAGATATGTAATGCATATACACCTCTATGCAGTAATCACTCAAAGTATGCATTTTGGGACAGTGTTCATTTAACTGAAGCATCTTACAGTTATCTTGCAGACCATCTTATAAGAGTAGCTTTGCCCTTATTCTTCAAATAG 1065 0.3906 MSSAMHLVMLMYGYIGVVAAKNLVESSKFSSILVFGDSTVDPGNNNYLLTISKANYFPYGIDFPGHVATGRFSNGKLVSDFLASALNIKDTVPPFLNPDLSDQELLTGVSFASGESGIDDFTASLTNVLSMDQQLQYFKAYTMKLKQIVGEDQAMQRLQHALVLISVGTNDFILNFHDFPSRRLMFITIDAYQDYLLDKFDVMIKELYDEGCRNIGVAGLPPLGCVPLQMSLKFKIDRQCLVHQNADSEKYNQKLAQRLSLLQATLPQSKIVYGDLYHPLLNLYTHPQHYGMEVTNRGCCGSGYLEVIEICNAYTPLCSNHSKYAFWDSVHLTEASYSYLADHLIRVALPLFFK* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0884 354 Pfam GDSL-like Lipase/Acylhydrolase 32 344 IPR001087 GO:0016788
Vra6g0884 354 CDD SGNH_plant_lipase_like 31 345 IPR035669 -
Vra6g0884 354 PANTHER GDSL ESTERASE/LIPASE EXL3 27 342 - -
Vra6g0884 354 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 27 342 - -
Vra6g0884 354 SUPERFAMILY SGNH hydrolase 32 347 - -
Vra6g0884 354 Gene3D SGNH hydrolase 18 349 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0884 Vra-Chr6 9313772 9315241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0884 29 346 Pollen Coat Proteome AT1G75910 35.625 3.33e-62 200
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0884 6 9313772 9315241 Vra6g0884 6 9313772 9315241 ECH