Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0882 ATGGCAGGATTGCTAACGGGACCAACATTTTTGTGGAAAATTTTAAGCCTTAGTAGCCAAAGACCCCTCTATGTAGCTCAGGCAATCTCTCTTTTCGGGATGACGATGTTTTTGTTCTTGATGGGAGTGAAAGTAGATCCACTTTTAGTTTTTAGAACAGGGAAAAAGACTTGGGCGATTGGCTTGTGTTCTTGTCTACTGCCACTCTTCTTTAGCTTATGTGTTGCTTATATTCTAAGGCAATATTTGTCCCCGGAATTAGAAATCTACAAGTATCTATATATTATGGCGGCTTTCTCAACAACTGGTTCCTTTCAAGCCACTGCCAGTGCATTACAAGATTTTAAGCTCCTAAGTTCTGAGGTTGGTCGATTAGCAATCTCTTCATCTATGATAAATGGAGCACTCAGCGCGTTATGGCAAGGCATTTTACGCACACTATATCCAAACGCTGTGCAGAAATACACAGACTTATCTTTTTCATTTGATTGCCTCTCTCTGATTTTGTTGTTGCTTGTCATCCTGTGTATTTGTCGACCTATCATGTTATGGATGATACGCATGACGCCCAAAGGGGAACCTGTGAAAGAGTCCTACATAGTTTCCATTTATGTTATGGTGTTGGGGAGTTCACTCCTTGGTGAGATCATTGGTGATCACTACATGGTTGGACCATTGATTCTTGGCCTAGCAGTGCCAGAAGGCCCACCTCTTGGATCAGCATTGGTAGAGAGGCTAGATACCTTGATCTCGGGACTGCTTTTGCCGTTGTTCTTCTTCTCTACCAGTGCTATGTTCAAGATCGATCTAGTTCATCTCTATGACTTCACAGTTGTACAATTTTTGGCCATAGCTAACTTCTTTGCCAAGCTTGCAGGAGCTGTGTTGCCCTCACTTTACTGCAACATGCCACTCATTGATGCACTTGCCTTAGGTCTCATCCTCAATTCCCAAGGCATCACACAGTTGCTGAACTTGCAAAGTTTACACTACTTTCATATTATAGATGATAGATCGTACGCGCAAATGCTGATAGCTTTAATATGGTTGACAGCAGCTTCCAACCCTATAGTGAAATTCTTGTATGACCCATCTAAAAGTTACTTGTCTCTAACAAGTTGGAGAACCATTGAGCATTCTCGTCCCGACATTGAACTTCCGATCATTACATGCATACACTGCGAGGAAAACACTACATCCATGATCAATTTTCTAGAAATATCTAACTCTAGAGTTGAAAGTCCCATTTACTGCCATGTTCTACACCTGCTTAAACTGAAAGGTAGAACAGCCCCACTTTTGATAGATCATGAACTCAAGTGCAGCAGCAACCTATGGCGCACTAATCATTCATTGAACATAATAAATGCCTTTAAATCATATGACCAACACAGCAGAAGCGTGAATGTGAAAGTCTACACATGTATCTCCCATTATGAGACAATGCACAATGAGATATGCATGCAGGCTGCAGAGAAAAGAGCATGCATATTAATTGCGCCTTTTCACAGGCACTTTGGAAAAACTGGGGTTATAGAATTAGCAAATCCCATTAGAGCATTGAATCGCAATTTGCTAAGAACCGCACCTTGTTCCGTTGGGATCTTAGTTGAACGTGGGAGTTTTGTTAGCAACAACCCTCTCACAACTACATCCTTTTATAATGTTGCAGTTGTATTTATAGAAGGGCCAGATGACCGTGAAGCATTGGCATATGCAATGCGCATAGCAGATCACCCCAATGTAAGTGTCACTGTAATCAGGATAACGGAACCTCGCAAGAAAAGAAGAACTTCGATCATAAGAGACCCTGATGCTGAAATAGTTCACAAGTTTATGAGTAACTGCCTCCAAATGAAACGACATGATTTCAAACAGCAAATTGTGAAAAATAGTTTTGAAATGGTTGCTGTCATTAGAGAACTCGAAGGTTACTTTGATTTGATTTTGGTTGGTAGACGCCACGAGAGTGAGTCTTCAATGTTCTATGGAATGCATGAGTGGATTGAGTACCCAGAACTTGGGTCTGTAGCAGACATGTTAGTGTCTTCAGATTCTACCTTTGACGGCTCAGTTTTGGTGGTGCAACAACAAAATAAGGAACGGCCAAAGGTTGGTTCTCAAGATTATTACAATATAGAAAATTCTGTCACCAATGGTGAATTACCAAATGTTTTGGATGTGCATCCTGATACAAAGGTATGA 2205 0.4104 MAGLLTGPTFLWKILSLSSQRPLYVAQAISLFGMTMFLFLMGVKVDPLLVFRTGKKTWAIGLCSCLLPLFFSLCVAYILRQYLSPELEIYKYLYIMAAFSTTGSFQATASALQDFKLLSSEVGRLAISSSMINGALSALWQGILRTLYPNAVQKYTDLSFSFDCLSLILLLLVILCICRPIMLWMIRMTPKGEPVKESYIVSIYVMVLGSSLLGEIIGDHYMVGPLILGLAVPEGPPLGSALVERLDTLISGLLLPLFFFSTSAMFKIDLVHLYDFTVVQFLAIANFFAKLAGAVLPSLYCNMPLIDALALGLILNSQGITQLLNLQSLHYFHIIDDRSYAQMLIALIWLTAASNPIVKFLYDPSKSYLSLTSWRTIEHSRPDIELPIITCIHCEENTTSMINFLEISNSRVESPIYCHVLHLLKLKGRTAPLLIDHELKCSSNLWRTNHSLNIINAFKSYDQHSRSVNVKVYTCISHYETMHNEICMQAAEKRACILIAPFHRHFGKTGVIELANPIRALNRNLLRTAPCSVGILVERGSFVSNNPLTTTSFYNVAVVFIEGPDDREALAYAMRIADHPNVSVTVIRITEPRKKRRTSIIRDPDAEIVHKFMSNCLQMKRHDFKQQIVKNSFEMVAVIRELEGYFDLILVGRRHESESSMFYGMHEWIEYPELGSVADMLVSSDSTFDGSVLVVQQQNKERPKVGSQDYYNIENSVTNGELPNVLDVHPDTKV* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0882 734 CDD USP_Like 555 695 - -
Vra6g0882 734 Gene3D - 446 699 - -
Vra6g0882 734 Pfam Sodium/hydrogen exchanger family 1 353 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vra6g0882 734 PANTHER CATION/H + ANTIPORTER 2 705 - -
Vra6g0882 734 PANTHER CATION/H+ EXCHANGER 2 2 705 - -
Vra6g0882 734 Gene3D - 1 367 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0882 Vra-Chr6 9255938 9260744 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0882 1 697 Antiporter Super Family AT2G13620 34.153 4.33e-129 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0882 - - var:108336653 1106.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0882 6 9255938 9260744 Vra6g0882 6 9255938 9260744 ECH