Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0879 ATGTCCTTAAACAAAACTTTATGGGTTTGCGAAAATACAACATCGTTTCAACCTATTCCCAGAGGAATATTCTTCAACGACAACCCTTTAAACTACACGCTAACATTGATCAGTTTACAGGCCTCCATAGCCTGCTTGTCCACCTTATTCTTGGAGTTTCTTCTTGTCCCCCTAGGGGAGACTACCTTCATTCCACATGTGCTGGCAGGGTTGCTAACGGGAACATCATTTTTGGGGAAAGCTTCACACCTTAAAAAGTTGTTCTCCACAAGAGCTCTCTACATAGTTGACGCAATCTCTGGTTTTGGGGTGATGATGTTTCTGTTCTTGATGGGAGTGAAAGTAGATCCACTTTTAGTTTTTAGAACAGGGAAAAAGACTTGGGCCATTGGCTTATGTTCTTCTGTATTCCCACTCATTTTTAGCATAGGTGCAGCTTATATTCTAAGGCAATATTTGTCTCCGGATTTAAAAGTGTACAAGTCCCTATATTTTATTGCGGCTTTCTCATCAACTGGTTCCTTTCAAGCCACTGCCAGTGCATTGCAAGATTTTAAGCTCCTAAATTCCGAGGTTGGTCGATTAGCAATCTCTTCATCTATGATAAATGGAGGGTTCAGTGCGTTGTGGCAAGGCCTGTTTGTCTCGCACCGAACAAAATCTATGCAAAAATACACAGTAAAACATTTGTCATTCGGTGGCCTCAGTCTGATTGCACTGGTGCTTGTCATCCTGTGTATTTGTCGACCTATCATGTTATGGATGATACGCATGACACCCAAAGGGAAACCCGTGAAAGAGTCCTATATAGTTTCCATCTATGTCATGGTGTTGGGGTGTTCATTCGTTGGTGAGGTCATTGGGGAGCACTACATATTTGGACCATTGATTCTTGGCCTAGCAGTGCCAGAAGGTCCACCTCTTGGATCAGCATTGGTAGAGAGGCTAGATACCTTGATCTCGGGACTGCTTTTACCGTTGTTCTTCTTAACTTCCAGTAATAGATTCAACCTCGATCTAATTTCTTTCGATGACTTCATAGTTGTACAGCTTGTGGCCTTAGGTAACTTCTTTGCCAAGCTTGCTGGAGTCATGTTGCCCTCACTCTATTGCAAGATGCCACTCACTGATGCACTCGCCTTAGCTCTCATCCTTTGTGCCCAAGGCTTTACACAGTTGATGCACTGTCAAAGTTTACAAACCTTTCGTCTTATAGATGATAGAGCGTACACGCAAATGGTGATAGCTTTAATATGGGTGACAGCAGCTTCCTGCCCTATAGTGAAATTCTTGTATGACCCATCTAAAAGTTACATGTCTCTAACAAGGTGGAGAACCATTGAGCATTCTCCTCCCGACATTGAACTTCCGATCATTGCATGCATACACTGTGAGGAAAACACTACATCCATGATCAATTTTCTAGAAATATCTAACTCTAGAGTTGATAGTCCCATTTACTTCCATGTTCTACACCTACTTCAACTGAAAGGTAGATCAACCCCACTTTTGATAGATCATGAACCCAAGCGCCGCAGCAGCAGCAATCTATCGCGCTCTAATCATTCAGTGAACATAATAAATGCCTTTAAATCATATGAGAAATACAGCAGAAGCGTGAATGTGAAAGTCTACACATGTATCTCCCCTTATGAGACAATGCACGATGAGATATGCATGCAGGCTGCACAGAAAAGAGCATGCATATTAATTGCACCTTTTCACAAGCAATTTAGAACAAATGGGGTTATAGAATTAGCAAGCTCCATTAGAGCATTGAATCGCCATTTGCTGAGAACCGCACCTTGTTCCGTTGGGATCTTAGTTGAACGTGGGAGTTTTGTTAGCAACAACCCTCTAACAACTACATCCTTTTATAATGTTGCAGTTGTATTTATAGAAGGGCCAGATGACCGTGAAGCATTGGCATATGCAATGCGCATAGCAGATCACCCCAATGTAAGTGTCACTGTAATTAGGATAACGGAACCTCGCAAGAAAAGTAGAACTTCGATCATAAGAGACCCTGATGCTGAAATAGTTCACAAGTTTATGATCAACTACCTCCAAATGAAACGACATGATTTCAAAGAGCAAGTTGTGAGAGATAGTCTTGAAATGGTTGGTGTGATTAGAACCCTTAAAGGTTGCTTTGATTTGATTTTGGTGGGTAGACGCCACGAGAGTGAGTCTTCAATGTTCTATGGAATGAATGATTGGATGGAGTACCCAGAACTTGGGTCTGTAGCAGACATGTTGGTGTCTTCAGATTCTACCTTTGACGGCTCAGTTTTGGTGGTGCAGCAACAAAATAAGGTAGGGAGAATGGTTGGTCGTCAAGATTATTACAATTCAGCAAATTTTTTCAGCAGGAGTGAACTACCCACCGTTTTGGAGGTGCAGCCCGAAACAACGGCGTGGCATGTTATTTAA 2433 0.4213 MSLNKTLWVCENTTSFQPIPRGIFFNDNPLNYTLTLISLQASIACLSTLFLEFLLVPLGETTFIPHVLAGLLTGTSFLGKASHLKKLFSTRALYIVDAISGFGVMMFLFLMGVKVDPLLVFRTGKKTWAIGLCSSVFPLIFSIGAAYILRQYLSPDLKVYKSLYFIAAFSSTGSFQATASALQDFKLLNSEVGRLAISSSMINGGFSALWQGLFVSHRTKSMQKYTVKHLSFGGLSLIALVLVILCICRPIMLWMIRMTPKGKPVKESYIVSIYVMVLGCSFVGEVIGEHYIFGPLILGLAVPEGPPLGSALVERLDTLISGLLLPLFFLTSSNRFNLDLISFDDFIVVQLVALGNFFAKLAGVMLPSLYCKMPLTDALALALILCAQGFTQLMHCQSLQTFRLIDDRAYTQMVIALIWVTAASCPIVKFLYDPSKSYMSLTRWRTIEHSPPDIELPIIACIHCEENTTSMINFLEISNSRVDSPIYFHVLHLLQLKGRSTPLLIDHEPKRRSSSNLSRSNHSVNIINAFKSYEKYSRSVNVKVYTCISPYETMHDEICMQAAQKRACILIAPFHKQFRTNGVIELASSIRALNRHLLRTAPCSVGILVERGSFVSNNPLTTTSFYNVAVVFIEGPDDREALAYAMRIADHPNVSVTVIRITEPRKKSRTSIIRDPDAEIVHKFMINYLQMKRHDFKEQVVRDSLEMVGVIRTLKGCFDLILVGRRHESESSMFYGMNDWMEYPELGSVADMLVSSDSTFDGSVLVVQQQNKVGRMVGRQDYYNSANFFSRSELPTVLEVQPETTAWHVI* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0879 810 PANTHER CATION/H+ EXCHANGER 2 7 784 - -
Vra6g0879 810 Pfam Sodium/hydrogen exchanger family 58 421 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vra6g0879 810 PANTHER CATION/H + ANTIPORTER 7 784 - -
Vra6g0879 810 Gene3D - 488 767 - -
Vra6g0879 810 CDD USP_Like 627 767 - -
Vra6g0879 810 Gene3D - 36 438 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0879 Vra-Chr6 9230654 9233684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0879 22 769 Antiporter Super Family AT2G13620 34.531 4.22e-142 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0879 - - var:108336653 1335.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0879 6 9230654 9233684 Vra6g0879 6 9230654 9233684 PCT