Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0878 ATGGCTTCTTCTACTGGTAGTTTAGATACCTCTGCAAGTGCAAACTCCTTCACCAACTTCACCTTCGCCACGCACCCTTTCATGACCACTTCTTTTTCTGACCTCCTTGCTTCTCCCACAGACAACAACAAGTCTCAGGGTGCTTTGTCTGAAAAAAATGCCTCTGGTGTGCCCAAATTCAAGTCCACTCCACCTCCTTCTTTGCCTCTTTCCCCTCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCACCTGGTTTGAGTCCCGCTGAGCTTCTTGACTCTCCGGTTCTCCTTAACTCTTCTAATATACTGCCGTCTCCAACAACTGGAGCATTTGTTTCTCAGAGCTTCAATTGGAAGAGCAGTTCAAGGGGAAACCAGCAAATTGTCAAAGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTCCAGACCCAGACGAGGCCTCCTGCTTCATCCACATTAACATATCAATCTTCAAATGTTGCAGTTCAAGCACAAAATCCATGGAATTTTCAAGATGCCACAAAGCAAGATAGTTTTTCTTCAGGGAAGGGTATGATGAAAACTGAAAACTCTTCTTCCATGCAGAGTTTCCCTCCTGAAATTGCCAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCTGATTTTGGAAATTATCCCCCACAATCTCAGACCTTAAACAGAAAGTCAGATGATGGATACAATTGGAGGAAGTATGGCCAAAAACAAGTGAAAGGAAGTGAGAATCCAAGAAGTTATTACAAATGCACATACCCAAATTGCCCTACTAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCCAAGCCTCAATCTACTAGGAGAAACTCATCATCGTCCTCTTCTCTTCCAATCCCTCCTTCAAATCCCATCAGCAATGAAATCCAAGATCAATCATATGCTACTCATGGTAGTGGGCAAATGGATTCCGCCGCCACCCCAGATAACTCATCTATATCAATAGGAGATGATGATTTTGAGCAGAGTTCTCAGAAGTGTAAATCAGGTGCAGATGAATATGATGAAGATGAACCTGATGCAAAAAGATGGAAAATTGAAGGAGAAAATGAGGGTATGTCAGCGCCTGGTAGTAGAACAGTAAGAGAACCTCGAGTTGTGGTTCAGACAACCAGTGACATTGATATCTTAGACGATGGGTACAGATGGAGAAAATATGGGCAGAAAGTAGTAAAGGGCAATCCAAATCCAAGGAGTTACTACAAGTGCACACACCCAGGATGTCCAGTGAGAAAGCATGTGGAACGAGCCTCACATGATCTCAGAGCCGTGATCACAACCTATGAGGGAAAGCACAACCATGATGTTCCTGCAGCCCGTGGCAGTGGTAGCCATTCTGTTAACAGACCACTGCCAAACAATGCTGCAAACCCCACCACTGCAGCCACTGCCATAAGGCCATTGCCAGTGATCCATCACACCGACAACTCGGTTCAAAGCCAAAGGCCACAAGCACCACCATCAGGGCAATCACCCTTCACCCTAGAGATGCTACAAAGTCCAGGAAATTTTGGATTCTCAAGTTTTGGAAATCCAATGGGTTCTTACATGAATCACCAACAATTATCTGACAATGTTTTCTCCTCCAGAACCAAGGAGGAGCCCAGAGATGACTTGTTCCTTGAATCTCTCCTATGCTGA 1722 0.4396 MASSTGSLDTSASANSFTNFTFATHPFMTTSFSDLLASPTDNNKSQGALSEKNASGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNSSNILPSPTTGAFVSQSFNWKSSSRGNQQIVKEEDKSFSNFSFQTQTRPPASSTLTYQSSNVAVQAQNPWNFQDATKQDSFSSGKGMMKTENSSSMQSFPPEIASVQTNHSNGFQSDFGNYPPQSQTLNRKSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSSSSLPIPPSNPISNEIQDQSYATHGSGQMDSAATPDNSSISIGDDDFEQSSQKCKSGADEYDEDEPDAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLPNNAANPTTAATAIRPLPVIHHTDNSVQSQRPQAPPSGQSPFTLEMLQSPGNFGFSSFGNPMGSYMNHQQLSDNVFSSRTKEEPRDDLFLESLLC* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0878 573 MobiDBLite consensus disorder prediction 33 72 - -
Vra6g0878 573 SMART WRKY_cls 404 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0878 573 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0878 573 MobiDBLite consensus disorder prediction 33 52 - -
Vra6g0878 573 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 42 547 IPR044810 GO:0003700
Vra6g0878 573 Gene3D WRKY domain 220 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0878 573 SUPERFAMILY WRKY DNA-binding domain 396 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0878 573 ProSiteProfiles WRKY domain profile. 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0878 573 ProSiteProfiles WRKY domain profile. 399 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0878 573 SUPERFAMILY WRKY DNA-binding domain 231 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0878 573 MobiDBLite consensus disorder prediction 208 232 - -
Vra6g0878 573 MobiDBLite consensus disorder prediction 208 237 - -
Vra6g0878 573 MobiDBLite consensus disorder prediction 287 347 - -
Vra6g0878 573 MobiDBLite consensus disorder prediction 460 486 - -
Vra6g0878 573 MobiDBLite consensus disorder prediction 282 386 - -
Vra6g0878 573 MobiDBLite consensus disorder prediction 348 376 - -
Vra6g0878 573 Gene3D WRKY domain 391 457 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0878 573 MobiDBLite consensus disorder prediction 178 197 - -
Vra6g0878 573 Pfam WRKY DNA -binding domain 405 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0878 573 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0878 573 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 42 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0878 Vra-Chr6 9218276 9221584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0878 230 572 WRKY Transcription Factor Family AT2G38470 55.525 4.30e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra6g0878 WRKY 1.6e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0878 6 9218276 9221584 Vra6g0878 6 9218276 9221584 ECH
Vra6g0878 6 9218276 9221584 Vra6g0878 6 9218276 9221584 PCT