Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0870 ATGAACTCTCACGATGATGAGCTTGGTGACAAAGTGGTTAGAGCTCAAGTACACGTATGGAAGAACATTCTGGGCTTTATAAACTCAATGTCCCTTAAATGCGTAGTTGACTTAGGCATACCAGATGTCATACATAACTATGGCCAACCCATGCCACTTTCAAACCTCATTGCTTCGCTACCAATCCATCCATCGAAAACCTTATTCATCCATCGCTTGATGCGAATCATGGTTCATTCTGGCTTTTTCTCTCAACAAAATGTCACCCAGAATGAGTTAGAAGTGAAGTATGTGCTAACTGATGCATCCGTACTACTTCTTAAAAACCATCCCTTGAGTCTGATACCCTTCATGCAGGTCTCCCTTGATCCATTTATGACAAAGCCATGGCATCAGCTTTCTGATTGGTTCAAAAGTGGTGATCTTACACCCTTTGAAACTGCACACGGGATGTCGTTTTGGGATTATGCTGGCCGTGACAGGAAAGTTAATCACTTATTCAATGATGCCATGGAGAATGACGCTCGATTGATCTCTAGTTTGATGATTGAGAAGTGCAAGGGAACGTTCACAGGATTGGAGTCATTGGTTGATGTTGGAGGAGGCACAGGGACCATGGCAAAGGCCATTGCGAAATCATTCCCAAAGATGCAATGCATTGTATTAGATCTCCCACATGTTGTTGCTGGCTTGCGAGGTACTGAAAACCTAAAATACGTTGGAGGGGACATGTTTGATGCTATTCCTCCAGCTGATGCCATTCTGTTGAAGTGGATAATGCATGACTGGAGTGATGAGGAATGCATGAAGATACTGAAGAAGTGCAAGGAAGCAATCAGAAAGGAAGGCAAGAAAGGGAAGGTGATAATCATAGAGACGGTGATGGATGATGAAAAGAAAGATTATGATGATGAATTTGTAGAAACCCAACTCTTGTTTGATATTTTAATGATGGTGTTCGTCGCTGGAAAAGAGAGAAACAAGAAGGAATGGGAGAAATTGATTTCCTCTGCTGGTTTCAGTGAGTGTAAGATAACTCCAGTCTTGGGATTAAGATATCTCATTGAGATCTATCCATAG 1080 0.4204 MNSHDDELGDKVVRAQVHVWKNILGFINSMSLKCVVDLGIPDVIHNYGQPMPLSNLIASLPIHPSKTLFIHRLMRIMVHSGFFSQQNVTQNELEVKYVLTDASVLLLKNHPLSLIPFMQVSLDPFMTKPWHQLSDWFKSGDLTPFETAHGMSFWDYAGRDRKVNHLFNDAMENDARLISSLMIEKCKGTFTGLESLVDVGGGTGTMAKAIAKSFPKMQCIVLDLPHVVAGLRGTENLKYVGGDMFDAIPPADAILLKWIMHDWSDEECMKILKKCKEAIRKEGKKGKVIIIETVMDDEKKDYDDEFVETQLLFDILMMVFVAGKERNKKEWEKLISSAGFSECKITPVLGLRYLIEIYP* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0870 359 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vra6g0870 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 357 IPR029063 -
Vra6g0870 359 Gene3D - 2 106 IPR036388 -
Vra6g0870 359 PANTHER O-METHYLTRANSFERASE 10 359 IPR016461 GO:0008168
Vra6g0870 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 359 IPR016461 GO:0008168
Vra6g0870 359 PANTHER ORCINOL O-METHYLTRANSFERASE 10 359 - -
Vra6g0870 359 CDD AdoMet_MTases 196 284 - -
Vra6g0870 359 Gene3D Vaccinia Virus protein VP39 107 359 IPR029063 -
Vra6g0870 359 PIRSF O-mtase 1 359 IPR016461 GO:0008168
Vra6g0870 359 Pfam O-methyltransferase domain 130 341 IPR001077 GO:0008171
Vra6g0870 359 SUPERFAMILY "Winged helix" DNA-binding domain 8 111 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0870 Vra-Chr6 9072144 9073560 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0870 30 345 Monolignol Biosynthesis Gene Families AT5G54160 33.540 6.38e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0870 - K16040 gmx:100807238 563.918