Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0867 ATGCAAGAAATTATGGAATCCCATGACGCGAAACTACTGAGGGCTCAAACACACATATGGAATCATATTTTTAACTTCATAAATTCCATGTCCCTTAAGTGTGTTGTTGAGTTAGGCATAGCAGACATCATACACAACCATGGCCAACCCATCTCACTCTCAAACCTCATTGCTTCACTGCCAATTCATTCTTCCAAAACTCATTTCATCCCTCGCTTGATGCGAATCATGGTCCATTCTGGCTTCTTCTCTCAACTCAGTCACACCGACAACGAGTTTGAAGTCAAGTATGCACTCACTGATGCCTCTTTGCTTCTGCTTAAGAGCCATCAAATGAGTGTGGCACCTTTCCTGCAGGCCATGCTTGATCCAGTTTTAACAAATCCATGGCATCACTTTTCTAATTGGTTCAAAACTGGTAATACTACACCGTTTGAAATGGTGCATGGGAAATCGTTTTGGGAGAATGCTGGCAGTGATCCCAGAATTAATATCTTATTCAATGATGCCATGGCAAGTGATGCTCAACTAATNACTAGTTCNGTNATTGAGAAATGCAAAGGGGTGTTNATGGGATNGGAGTCATTGGTTGATGTTGGGGGAGGTACAGGAACCATGGGAAAGGCCATTGCCGAATCCTTCCCTCAGTTGGAATGCATCGTATTTGATCTTCCACATGTTGTTTCTGGCTTGCAAGGAAGTGGAAACCTTAAATATGTTGGAGGGGACATGTTTGAGGCGATTCCTCCAACAGATGCCATTTTGTTGAAGTGGATATTACATGACTGGAGCGATGAGGAGTGTGTGAGCATATTAAAGAAATGCAAGGAAGCTATATCTAAGAAAGGCAAAGAAGGGAAAGTGATAATCATAGACATGGTGATAGATAATGAAGTGAAAGATGAAGAGTGTGTTGAAACACAGCTCTTCTTTGATATGTTGATGATGGTGTTGGTGAAGGGAAAAGAGAGAAACGAGAAGGAATGGGTGAAATTGTTTTCCTCTGCTGGTTTCAGTAACTACACAATAACTCCCGTTTTGGGCTCAAGGTCTCTCATTCAGATCTATCCATAG 1074 0.4171 MQEIMESHDAKLLRAQTHIWNHIFNFINSMSLKCVVELGIADIIHNHGQPISLSNLIASLPIHSSKTHFIPRLMRIMVHSGFFSQLSHTDNEFEVKYALTDASLLLLKSHQMSVAPFLQAMLDPVLTNPWHHFSNWFKTGNTTPFEMVHGKSFWENAGSDPRINILFNDAMASDAQLXTSSVIEKCKGVXMGXESLVDVGGGTGTMGKAIAESFPQLECIVFDLPHVVSGLQGSGNLKYVGGDMFEAIPPTDAILLKWILHDWSDEECVSILKKCKEAISKKGKEGKVIIIDMVIDNEVKDEECVETQLFFDMLMMVLVKGKERNEKEWVKLFSSAGFSNYTITPVLGSRSLIQIYP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0867 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Vra6g0867 357 Gene3D Vaccinia Virus protein VP39 107 357 IPR029063 -
Vra6g0867 357 Gene3D - 2 106 IPR036388 -
Vra6g0867 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Vra6g0867 357 PANTHER O-METHYLTRANSFERASE 10 357 IPR016461 GO:0008168
Vra6g0867 357 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vra6g0867 357 Pfam O-methyltransferase domain 130 339 IPR001077 GO:0008171
Vra6g0867 357 PANTHER O-METHYLTRANSFERASE 10 357 - -
Vra6g0867 357 SUPERFAMILY "Winged helix" DNA-binding domain 9 110 IPR036390 -
Vra6g0867 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 353 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0867 Vra-Chr6 8982731 8984532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0867 30 343 Monolignol Biosynthesis Gene Families AT5G54160 32.915 2.88e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0867 - K16040 gmx:100807238 572.392