Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0862 ATGCCTTCAACTGCCTTTCAATGGCTGAGTCTTGTGGGCATAATTTGGCTCCAATCCATTACAGGAACAAACACCAATTTTCCTGCTTACTCATCACAGCTGAAACAGCTTCTTTCCATCTCTCAGATTCAGCTCAATAACCTTGCTTTTGCCTCTGATGCTGGCAAACTATTTGGTTTTTTATCTGGCCTGGCTTCTATTTACTTACCCCTTTGGCTTGTACTCATGATTGGTTCAACTCTTGGACTGGTTGGCTATGGTGTACAATATCTCTTCATCACAAACCATATCTCCTCTCTCTCCTATTGGCATGTCTTCTTTCTTACTGTTTTAGCAGGAAACAGCATTTGTTGGATTAATACTGTCTGTTATGTCATCACCATAAGGAACTTCCCATCTGATCGCCAAGTTGCTGTGGGGATAACAACTAGTTACCAAGGTTTAAGTGCTAAGGTTTATACCACCATTGTTGATGTTGTCGGACACAAAAAAAGGGCCATAACCTTTCTTTTTCTGAACTCAGTCTTGCCTTTGCTAGTTAGCCTAATAGCAACTCCATTGGTTAGAGAAATTGAAGTCATAAGTCCTAAACACAGGAGGATTGGATTTGATGTTATCTTTGCCATAACAATTGTTACTGGAATTTATGCTATCATGAGCAGTTTGGAGTTTGTCTCAAACAAAATATCTTCACTGGGTAGTCTTATTGGTATTTCAGTGTCCCTTCTCATACCTTTGTTAGTTCCACTTTCCATGATGATCGTGGGGTCATGGCACAAAACTACAGAAAAACAAAAAGTGTATAATTTCACTGTGGAGGATGGTCATAATGAGAAAACGGAGAATGAGGTGAAAGAAGGTGAAGAAAGTGAAGAAAGTGAAGAAGTTCATGATATAGGTATAAAAGAAGAAGTAGAAACAAAGTTAATGCTGAGAAGACTAGATTTCTGGTTATACTTCTTCGTGTATTTATTCGGTGCAACACTGGGTTTGGTGTTTCTAAATAACTTGGGACAAATAGCCGAATCCAGAGGTTACAATGGAACTTCATCATTGGTGTCTTTGTCTTCTTCTTTTGGATTCTTTGGACGTCTTATGCCATCTATAATAGACTACTTTTACAGGGAAAACAAGTGTGCAATATCAAAACCAGGATATATGATGGTATTAATGGCTCCAACTGCTGGGGCATTTTTCTTACTGCTGAACAAGACTGACCTTGCCCTGTATGTTAGCACTGCCATAATTGGAGTGTGTACTGGTGCAATAACTTCAATTGCTGTGTCGATGACCACTGAATTATTTGGAACCAAGAATTTCTCAGTGAATCATAATGTGGTGGTAGCCAACATTCCTGTGGGGTCCCTTTTATTTGGATACTTGGCTGCTATTGTTTATCATAAGGGAGGGAATGAAAATGGAAAATGCATGGGCATGGAATGCTACAGGAACACTTTCATCTTATGGGGTTCCCTTTCTTTCTTTGGCACTTTTTTGGCTTTCATTCTACATCTTCGGACTCGCAAGTTTTACTCACATAAACTGTAG 1548 0.3928 MPSTAFQWLSLVGIIWLQSITGTNTNFPAYSSQLKQLLSISQIQLNNLAFASDAGKLFGFLSGLASIYLPLWLVLMIGSTLGLVGYGVQYLFITNHISSLSYWHVFFLTVLAGNSICWINTVCYVITIRNFPSDRQVAVGITTSYQGLSAKVYTTIVDVVGHKKRAITFLFLNSVLPLLVSLIATPLVREIEVISPKHRRIGFDVIFAITIVTGIYAIMSSLEFVSNKISSLGSLIGISVSLLIPLLVPLSMMIVGSWHKTTEKQKVYNFTVEDGHNEKTENEVKEGEESEESEEVHDIGIKEEVETKLMLRRLDFWLYFFVYLFGATLGLVFLNNLGQIAESRGYNGTSSLVSLSSSFGFFGRLMPSIIDYFYRENKCAISKPGYMMVLMAPTAGAFFLLLNKTDLALYVSTAIIGVCTGAITSIAVSMTTELFGTKNFSVNHNVVVANIPVGSLLFGYLAAIVYHKGGNENGKCMGMECYRNTFILWGSLSFFGTFLAFILHLRTRKFYSHKL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0862 515 Pfam Nodulin-like 7 249 IPR010658 -
Vra6g0862 515 SUPERFAMILY MFS general substrate transporter 12 509 IPR036259 -
Vra6g0862 515 Gene3D MFS general substrate transporter like domains 192 507 IPR036259 -
Vra6g0862 515 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 514 - -
Vra6g0862 515 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 3 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0862 Vra-Chr6 8882970 8884702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0862 1 514 Nodulin-like Gene Family AT2G30300 47.901 1.41e-154 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0862 - - gmx:100808034 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0862 6 8882970 8884702 Vra6g0862 6 8882970 8884702 ECH
Vra6g0862 6 8882970 8884702 Vra6g0862 6 8882970 8884702 PCT