Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0856 ATGAATTTTCTTCAATCTCTTCTTCTGATCGTTATGGCCACTTTGGCGTCAACATTTATGATCCCTACCTTTGCTGAGCTAAGTCCTCATTATTATGAGCAAGTTTGCCCTGAGGCATTGCCAATCATATACTCACTTGTTAAGCAGGCAATTCTTCATCAAAAACGCATCGGAGCATCCTTGCTGCGTTTGCATTTCCATGACTGCTTTGTTAATGGCTGTGATGGATCAGTGCTGCTAGATGACACGCCTTTCTTCTTGGGGGAGAAGACTGCATTTGCAAATCTGAATTCAATCAGAGGATTCGAGGTGGTTGATCAAATCAAAGCAGCAGTTGATAAGGCTTGCAAACGTCCTGTAGTATCATGCGCAGATATCTTGGCTGTAGCTGCTCGTGACTCTGTAGCCATATTGGGTGGTCCACGATATTGGTACCAAGTGTTACTGGGCAGAAGAGATGCAAGAAATGCAAGCAGGGATGCTGCAAATGCCAATCTTCCAGCTCCATTTTTCAACTTCCAACAGCTTCTTGCTAATTTCCAAACTCATGGACTAAACCTCAAGGATTTGGTGGTCCTCTCCGGTGGCCATAGCATTGGATTAGCAAGGTGCATTAATTTCAGGGACAGAATCTTCAATGACACCAATATAGACCCCAAATTTGCAGCAACTTTGCGTGAGTCATGCCCTCGAAGAGGAGGAGACAATAGCTTAGCACCACTTGATGCCACTCCTTCAAAATTTGACACCACCTACTATAACGCTTTGTTGTACAAAAAGGGTCTCCTCCATTCTGATCAAGAGCTGTTCAAGGGTGATTATTCTGAAAGTGACAGTTTGGTGAAACTATACAGCAATAACCCTTATGCTTTTGCCAAAGATTTTGGAGTTTCCATGATTAAGATGGGTAACTTGAAGCCTCTTACAGGGTCCAAAGGAGAGATCAGATACAATTGCAGAAAAGTCAATTAG 972 0.4311 MNFLQSLLLIVMATLASTFMIPTFAELSPHYYEQVCPEALPIIYSLVKQAILHQKRIGASLLRLHFHDCFVNGCDGSVLLDDTPFFLGEKTAFANLNSIRGFEVVDQIKAAVDKACKRPVVSCADILAVAARDSVAILGGPRYWYQVLLGRRDARNASRDAANANLPAPFFNFQQLLANFQTHGLNLKDLVVLSGGHSIGLARCINFRDRIFNDTNIDPKFAATLRESCPRRGGDNSLAPLDATPSKFDTTYYNALLYKKGLLHSDQELFKGDYSESDSLVKLYSNNPYAFAKDFGVSMIKMGNLKPLTGSKGEIRYNCRKVN* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0856 323 PANTHER CATIONIC PEROXIDASE 9 322 - -
Vra6g0856 323 Pfam Peroxidase 45 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 CDD secretory_peroxidase 26 322 IPR033905 GO:0004601|GO:0042744
Vra6g0856 323 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vra6g0856 323 Gene3D Peroxidase, domain 2 167 302 - -
Vra6g0856 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Vra6g0856 323 Gene3D - 31 323 - -
Vra6g0856 323 SUPERFAMILY Heme-dependent peroxidases 26 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 ProSiteProfiles Plant heme peroxidase family profile. 26 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0856 323 PANTHER PEROXIDASE 72-RELATED 9 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0856 Vra-Chr6 8769436 8772371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0856 25 323 Peroxidase AT5G05340 54.967 2.38e-117 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0856 K00430 - gmx:100810852 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0856 6 8769436 8772371 Vra6g0856 6 8769436 8772371 PCT