Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0853 ATGGCACTTTCTTCTTCTTCTTCTTCTTCTTCTTCAACAACCACTTTTGCTATAACTTTGTTCACTCTTTTTCTTATAGGAAGTTCTTCAGCTCAACTCTCTGAGAACTTCTACGCAAAACAATGTCCCAAGCTTTTATCTGCTGTAAAATCTGTGGTTCAATCTGCTGTGGCTAAAGAACCTCGAATGGGAGCTTCTCTCCTTCGCCTCTTCTTTCATGACTGCTTTGTCAATGGTTGTGATGCATCAGTACTACTTGATGGCCCTTCCTCAGAGAAGACTGCACCACCCAACGCTAATTCTTTGAGAGGCTATGAAGTCATTGATGCCATTAAGTCTAAGGTGGAGGCAATTTGCCCAGGAATAGTCTCATGTGCTGATATAACAGCCATTGCTGCTCGTGATTCTGTCACTATTCTTGGAGGGCCATTTTGGAAGGTTAAACTTGGTAGAAGGGATTCCAAGACTGGATTCCTCCAACTTGCAAGCAGTGGTGTTCTCCCATCTCCATCTTCTTCCCTCAGCACCCTTATCTCAAACTTCAAAGATCAAGGCCTCTCTGCCAAGGACATGGTAGCCTTATCTGGAGCACACACAATTGGGAAGGCAAGGTGTGCAGTTTATGGAAGTCGCATATACAATGAAAAAAACATTGACAGTTTGTTTGCGAAGGCAAGGCAAAAGAACTGTCCAAGAGACAGCAGTGGGACAGCAAAGAACAACAATGTTGCACCACTAGATTTGAAAACTCCTGACCATTTTGACAACAGCTACTACAAGAATCTCATCAGCAAAAAGGGCCTTCTTCATTCTGATCAAGTTCTCTTCAATGGAGGATCCACAGATTCACTTGTTAGAGAGTACAGCAACAATCAGAGGGCATTTGAGTCTGATTTTGTCACTGCAATGATCAAGATGGGAAACATCAAACCTTTAACCGGCTCAAATGGGGAGATAAGGAGGCATTGCAGTAGACCTAATTAG 984 0.4309 MALSSSSSSSSSTTTFAITLFTLFLIGSSSAQLSENFYAKQCPKLLSAVKSVVQSAVAKEPRMGASLLRLFFHDCFVNGCDASVLLDGPSSEKTAPPNANSLRGYEVIDAIKSKVEAICPGIVSCADITAIAARDSVTILGGPFWKVKLGRRDSKTGFLQLASSGVLPSPSSSLSTLISNFKDQGLSAKDMVALSGAHTIGKARCAVYGSRIYNEKNIDSLFAKARQKNCPRDSSGTAKNNNVAPLDLKTPDHFDNSYYKNLISKKGLLHSDQVLFNGGSTDSLVREYSNNQRAFESDFVTAMIKMGNIKPLTGSNGEIRRHCSRPN* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0853 327 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 ProSiteProfiles Plant heme peroxidase family profile. 32 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Vra6g0853 327 PANTHER PEROXIDASE 72-RELATED 10 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 CDD secretory_peroxidase 32 325 IPR033905 GO:0004601|GO:0042744
Vra6g0853 327 Gene3D Peroxidase, domain 2 168 306 - -
Vra6g0853 327 Pfam Peroxidase 49 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 Gene3D - 36 324 - -
Vra6g0853 327 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
Vra6g0853 327 SUPERFAMILY Heme-dependent peroxidases 32 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g0853 327 PANTHER PEROXIDASE 10 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0853 Vra-Chr6 8720218 8723241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0853 10 327 Peroxidase AT5G58400 61.059 3.33e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0853 K00430 - gmx:100812478 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0853 6 8720218 8723241 Vra6g0853 6 8720218 8723241 ECH
Vra4g0666 4 12364526 12367311 Vra6g0853 6 8720218 8723241 ECH
Vra6g0853 6 8720218 8723241 Vra6g0853 6 8720218 8723241 PCT