Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0852 ATGCGGTGCTGTCAACCAATTCTTCTCCTTCTGTCACTTTCAACTGGGAACTATTTGCCATATAGTACTTCTCCTCTCAATCTCCCTTATTTTTGTGCAGGTATTATGGAGATATCTTTATTGAAGGTCCTATCTGATGCAATATCCTCATTTTTGGATTTATCATTTTCTGAAAAGATGAAGTTAGAACCTGTATCAAAATGTTACCAAAAGGCAGAGAAGATGCTTAAGCTATTGAAGCCTATTGTCGATACTAATGTTTTTTCAGATATAGCTTCTCACGAAGTAGATAGGAAACTATTTGAGGAACTTGGTGTGGCAGTTGATGAGTTGAGAGAGCTTATTCTGAACTGGCATCCGTTATCTAGCAAAATTTACTTTGTTAATCAAGTTGATCCCATAATATCAACAGTTCAGGCATTGGGTCTAAGCATTTTACAACAGCTGGAGGTTTCACATCAAGTTGTCCCTGATAATTTGGGAAATGAAACATCATCAGCCATTAAAAAATCTATTATGGAACAACAGGAAGGTGTAATACCAAGTTTGGAGGTCCTGGAAAACATTGCTGACAACCTGGGTCTAAGGTCTAATCAAGAGGTCCTGATTGAGGCTGTAGCCCTTGACAAGCTGAAGGAGAAGGCTGAACAAATTGAAAACACTTCAGAAGTTGAATATGTTGATAAAATGATCTCAATTGTAAATCGTGTGCATGAGCATATTGTTATGCTTAAGCAAGCTCAGAGTTCTATCCCAGTGTCAGTACCTGCTGACTTTTGCTGTCCCCTGTCTTTGGAATTGATGACAGATCCGGTCATTGTTGCATCTGGACAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGACCTAGGTCTTACTGTTTGTCCAAAGACACGCCAGACTCTAGTCCACACCAATCTAATACCTAACTACACTGTAAAAGCATTAATTGCTAACTGGTGTGAAACACATGATGTAAAGCTTCCTGATCCCATTAAGTCCAAAAGCTTAAATCAACCATCTCCCTTTCGTGTGTCTATGGAGTCTGGTTTGACCAAGGATTTGCCTGGTATAACTAGTAGTGAACCCCACCAAGAACGAACATCAACATTGCATCCCTCTTCTATTCCAGGTGGTTCTTTGAATGGCACGGTTCATGAGCCATATGTGGATCTTGAAAGAATATCACACACAGGTTCAGATGATGGATCTGCCAGCTCAAATGAAGGGAGTGTCGATTCATTTGGTGAATCATTAACATCACCATCCAGAAATGCCTTGAGCTCAGAACAATCTCACAATGATGTTAGAACTACTTGTGATGTCAACAATACTCTGCTGTCGACCAGTTCAGTCCACAATCACGATGCTTCTTCTGGGGAATTGAATTCAGGACAAGATGCTGTTCGCTTGCCAACTCGGCATAGAGACTCTGAGTTTTCTTCCCGATTAGCAGTGCCAAGGTCTCATAGCCAAACTATATGGCAACGATCATCTGAGTGGCTTGTTCCTAGGGTAGTGTCTACTAGTGAAACAAGAGCTGATCTTTCTGCTGCTGAAACCCAGGTTTTGAAATTAATGGAGCAGTTAAAGATTGATTCTCTTGATGCTAAGAGAGAGGCAACATCAGAACTTCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTCTGATTTCAAATTGTGGAGCCATTAGCTTATTAGTTGATTTACTGCAGTCAACTGATTCTATGATCCAGGAAAATTCTGTTACAGCTCTCCTTAACTTATCAATCAATGATAACAACAAGGCTGCTATTGCAAATGCTGGTGCAATTGAACCTTTGATTCATGTCCTCAAGACAGGGAGTGCAGAAGCCAAGGAAAATTCAGCTGCCACTCTTTTCAGCCTCTCAGTAACTGAGGAAAACAAAATCAGGATAGGGAGGTCTGGGGCAATTGGACCACTGGTTGATTTGTTGGGAAACGGAACCCCAAGGGGGAAGAAAGATGCTGCCACTGCCTTGTTTAATTTGTCCATATTTCACGAAAACAAGGACCGGATTGTGCAAGCAGGTGCTGTAAAACACCTTGTAGAGTTAATGGACCCAGCAGCTGGAATGGTGGACAAGGCTGTGGCTGTTTTAGCAAATCTTGCTACAATACCAGAAGGGAAAGCAGCCATTGGTGATCAAGGTGGGATTCCTGTTTTGGTTGAGGTTATTGAGTTGGGCTCTGTGAGAGGAAAGGAGAATGCTGCAGCGGCTCTTCTACATCTATGCTCAGACAACCACAGATATTTAAACAGTGTGCTCCAAGAAGGAGCTGTTCCACCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTTGCACTCCTTAATCAATTTAGAAGCCAAAGACATGGTGGTGGGAGAGGTTGA 2421 0.4197 MRCCQPILLLLSLSTGNYLPYSTSPLNLPYFCAGIMEISLLKVLSDAISSFLDLSFSEKMKLEPVSKCYQKAEKMLKLLKPIVDTNVFSDIASHEVDRKLFEELGVAVDELRELILNWHPLSSKIYFVNQVDPIISTVQALGLSILQQLEVSHQVVPDNLGNETSSAIKKSIMEQQEGVIPSLEVLENIADNLGLRSNQEVLIEAVALDKLKEKAEQIENTSEVEYVDKMISIVNRVHEHIVMLKQAQSSIPVSVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIANWCETHDVKLPDPIKSKSLNQPSPFRVSMESGLTKDLPGITSSEPHQERTSTLHPSSIPGGSLNGTVHEPYVDLERISHTGSDDGSASSNEGSVDSFGESLTSPSRNALSSEQSHNDVRTTCDVNNTLLSTSSVHNHDASSGELNSGQDAVRLPTRHRDSEFSSRLAVPRSHSQTIWQRSSEWLVPRVVSTSETRADLSAAETQVLKLMEQLKIDSLDAKREATSELRLLAKHNMDNRILISNCGAISLLVDLLQSTDSMIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSAEAKENSAATLFSLSVTEENKIRIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGKAAIGDQGGIPVLVEVIELGSVRGKENAAAALLHLCSDNHRYLNSVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGGGRG* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0852 806 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 46 803 - -
Vra6g0852 806 MobiDBLite consensus disorder prediction 400 437 - -
Vra6g0852 806 Gene3D - 597 701 IPR011989 -
Vra6g0852 806 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vra6g0852 806 SMART arm_5 635 675 IPR000225 GO:0005515
Vra6g0852 806 SMART arm_5 757 798 IPR000225 GO:0005515
Vra6g0852 806 SMART arm_5 553 593 IPR000225 GO:0005515
Vra6g0852 806 SMART arm_5 716 756 IPR000225 GO:0005515
Vra6g0852 806 SMART arm_5 676 715 IPR000225 GO:0005515
Vra6g0852 806 SMART arm_5 594 634 IPR000225 GO:0005515
Vra6g0852 806 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vra6g0852 806 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 646 688 IPR000225 GO:0005515
Vra6g0852 806 MobiDBLite consensus disorder prediction 354 382 - -
Vra6g0852 806 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 687 728 IPR000225 GO:0005515
Vra6g0852 806 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 605 647 IPR000225 GO:0005515
Vra6g0852 806 Gene3D - 702 801 IPR011989 -
Vra6g0852 806 CDD RING-Ubox_PUB 259 301 IPR045210 -
Vra6g0852 806 MobiDBLite consensus disorder prediction 332 437 - -
Vra6g0852 806 Pfam Armadillo/beta-catenin-like repeat 594 633 IPR000225 GO:0005515
Vra6g0852 806 Pfam Armadillo/beta-catenin-like repeat 636 674 IPR000225 GO:0005515
Vra6g0852 806 Pfam Armadillo/beta-catenin-like repeat 717 756 IPR000225 GO:0005515
Vra6g0852 806 Pfam Armadillo/beta-catenin-like repeat 678 714 IPR000225 GO:0005515
Vra6g0852 806 Pfam Armadillo/beta-catenin-like repeat 555 592 IPR000225 GO:0005515
Vra6g0852 806 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Vra6g0852 806 Gene3D - 481 596 IPR011989 -
Vra6g0852 806 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 564 606 IPR000225 GO:0005515
Vra6g0852 806 PANTHER U BOX DOMAIN-CONTAINING 46 803 - -
Vra6g0852 806 MobiDBLite consensus disorder prediction 451 467 - -
Vra6g0852 806 SUPERFAMILY ARM repeat 524 796 IPR016024 -
Vra6g0852 806 SUPERFAMILY RING/U-box 242 332 - -
Vra6g0852 806 MobiDBLite consensus disorder prediction 451 484 - -
Vra6g0852 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 331 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0852 Vra-Chr6 8706519 8717969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0852 215 806 U-box Gene Family AT2G23140 60.407 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0852 - - gmx:100777715 1205.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0852 6 8706519 8717969 Vra6g0852 6 8706519 8717969 PCT