Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0849 ATGTTTGGACATCAGGATATAGATAGATTAGAGGAGATAACAAAGGTGAGAGCAGAGGTGGAGGCATCTTCTCAAATGGGAAGGAAGCATTTCTATGGTCCAACTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACATGAGCCTCAAAAGTTCGTAGCCGTTCACAAAGTCTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGAGGTACCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCCTTGTCTACGAAGCTAACTTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATATCAGCTTTGCAGCAACAAGTTCAATCTTTACAAGCAGAACTAAATGCAATAAGGGCAGAGATACTAAAATACAAATATAGAGAGGCTGCAAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATCTCAGCAGCAATTCCCACAAACTCACAACCACAAGGTCTTTCTCAACCTCTTACTCCTCCTCCTCCACCAAAACCATTGCATACTCCTCCACTAAAACCATTGCCTTCTCCTTCTGTTATCCTTTCATCCTTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 741 0.4318 MFGHQDIDRLEEITKVRAEVEASSQMGRKHFYGPTPGITLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAELNAIRAEILKYKYREAASLISSNHAALVSSADAISAAIPTNSQPQGLSQPLTPPPPPKPLHTPPLKPLPSPSVILSSFSSSSTSSVYTPPKSSMSLGSISSTENVPYFV* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0849 246 MobiDBLite consensus disorder prediction 209 246 - -
Vra6g0849 246 MobiDBLite consensus disorder prediction 185 207 - -
Vra6g0849 246 Pfam Lateral organ boundaries (LOB) domain 45 141 IPR004883 -
Vra6g0849 246 Coils Coil 124 151 - -
Vra6g0849 246 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 28 245 - -
Vra6g0849 246 MobiDBLite consensus disorder prediction 177 246 - -
Vra6g0849 246 PANTHER LOB DOMAIN PROTEIN 28 245 - -
Vra6g0849 246 ProSiteProfiles LOB domain profile. 44 145 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0849 Vra-Chr6 8672263 8673802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0849 26 158 AS2 family AT2G30340 79.104 1.60e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra6g0849 LOB 2.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0849 - - ccaj:109795340 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0849 6 8672263 8673802 Vra6g0849 6 8672263 8673802 ECH