Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0847 ATGTCTCCTAGGGAGAACAAATCAAACATCTTGATGCAAAAATATGAACTAGGAAGGTTACTAGGTAAGGGAACGTTTGGAAAGGTTTATTATGGCCGTAGTACAATAATTAACCAAAGTGTGGCCATTAAAGTGATTGACAAGAATAAGGTTATAAAAGCTGGGCAGGTTGATCACGTTAAAAGGGAAATATCTATTATGAGACTGGTGAAGCACCCAAATGTTATTGAGCTTTTTGAGGTCATGGCCACAAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGGGAACTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGATGTTGCACACAAATATTTTAGGCAGCTAGTGAATGCAGTGGAATTTTGTCACAGTAGAGGTGTATGCCATAGAGATATAAAGCCAGAGAACATTCTGTTGGATGAAAATGATAATCTGAAGATCTCAGATTTCGGGTTAAGTGCCCTGGCTGAATCCAAACACCAAGATGGTTTGTTGCACACAGCTTGTGGAACACCTGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTATGATGGTGCAAAAGCTGATATTTGGTCATGTGGGGTAGTTTTGTTTGTCTTACTAGCAGGTTACATTCCTTTTCGAGATCCTAATTTGATGGTGATGTATAGGAAGATAAGCAAGGCAGAGTTTACATGTCCTAGATGGTTCCCAAGAGGAGTTCGGGGGCTATTGAGAAAGATGTTGGATCCAAATCCAAACACTAGGATTTCCATAGATGAGATTAAGCAATGTTCTTGGTTTAGGAAGTGGCCAAATGGTATACAGACAACACAAGAAGGGGAAAACAGGAGTGTCTCTCCTTCAATTACAAATCATTCTGAACAATATGGTGATGAAAGTAATGGCCTAGCAGCAGAAGCAAGGCAAGAGTCAGTTGTGCCAGTAAGTATAAATGCCTTTGATATAATCTCCCTCTCACCTGGGTTTAATCTTTGTGGATTCTTTGAAAACAGCTTTCAGAAAAGGGAAGCAAGATTTACTTCAAGACAACCAGCATCTCTCATCATCTTCAGGCTGGAAGAAATTGCAAATCGGCTGAAGATGAAAATAAAGAAAAGGGCTGCCGGTTTGTTGAAATTAGAGAACCTTCATGAAGGTAGGAAGGGGATCTTATCCATTGATGCAGAAATCTTTGAGGTTACTCCACTTCTGCACTTGGTGGAGGTGAAGAAATCAAATGGAGATACGCTGGAATATGAGAAAATACTGAAAGAAGCCATAAGGCCTGCTCTTAAAGATATTGTTTGGGTATGGCAAGGTGACCAACAACAATAA 1341 0.399 MSPRENKSNILMQKYELGRLLGKGTFGKVYYGRSTIINQSVAIKVIDKNKVIKAGQVDHVKREISIMRLVKHPNVIELFEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEDVAHKYFRQLVNAVEFCHSRGVCHRDIKPENILLDENDNLKISDFGLSALAESKHQDGLLHTACGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYIPFRDPNLMVMYRKISKAEFTCPRWFPRGVRGLLRKMLDPNPNTRISIDEIKQCSWFRKWPNGIQTTQEGENRSVSPSITNHSEQYGDESNGLAAEARQESVVPVSINAFDIISLSPGFNLCGFFENSFQKREARFTSRQPASLIIFRLEEIANRLKMKIKKRAAGLLKLENLHEGRKGILSIDAEIFEVTPLLHLVEVKKSNGDTLEYEKILKEAIRPALKDIVWVWQGDQQQ* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0847 446 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vra6g0847 446 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0847 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 445 - -
Vra6g0847 446 MobiDBLite consensus disorder prediction 279 303 - -
Vra6g0847 446 MobiDBLite consensus disorder prediction 279 300 - -
Vra6g0847 446 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165
Vra6g0847 446 SUPERFAMILY Protein kinase-like (PK-like) 11 298 IPR011009 -
Vra6g0847 446 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0847 446 CDD CIPK_C 320 434 - -
Vra6g0847 446 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0847 446 Gene3D Transferase(Phosphotransferase) domain 1 5 318 - -
Vra6g0847 446 Gene3D Kinase associated domain 1, KA1 319 439 - -
Vra6g0847 446 Pfam NAF domain 316 374 IPR004041 GO:0007165
Vra6g0847 446 PANTHER - 5 445 - -
Vra6g0847 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0847 Vra-Chr6 8645221 8647779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0847 5 446 CBL-interacting serine-threonine protein kinases AT5G58380 64.901 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra6g0847 Pkinase 3.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0847 - K07198 gmx:100779316 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0847 6 8645221 8647779 Vra6g0847 6 8645221 8647779 ECH
Vra6g0847 6 8645221 8647779 Vra10g0449 10 10207009 10209337 ECH
Vra4g0659 4 12259117 12262920 Vra6g0847 6 8645221 8647779 ECH
Vra6g0847 6 8645221 8647779 Vra6g0847 6 8645221 8647779 PCT