LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra6g0847	ATGTCTCCTAGGGAGAACAAATCAAACATCTTGATGCAAAAATATGAACTAGGAAGGTTACTAGGTAAGGGAACGTTTGGAAAGGTTTATTATGGCCGTAGTACAATAATTAACCAAAGTGTGGCCATTAAAGTGATTGACAAGAATAAGGTTATAAAAGCTGGGCAGGTTGATCACGTTAAAAGGGAAATATCTATTATGAGACTGGTGAAGCACCCAAATGTTATTGAGCTTTTTGAGGTCATGGCCACAAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGGGAACTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGATGTTGCACACAAATATTTTAGGCAGCTAGTGAATGCAGTGGAATTTTGTCACAGTAGAGGTGTATGCCATAGAGATATAAAGCCAGAGAACATTCTGTTGGATGAAAATGATAATCTGAAGATCTCAGATTTCGGGTTAAGTGCCCTGGCTGAATCCAAACACCAAGATGGTTTGTTGCACACAGCTTGTGGAACACCTGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTATGATGGTGCAAAAGCTGATATTTGGTCATGTGGGGTAGTTTTGTTTGTCTTACTAGCAGGTTACATTCCTTTTCGAGATCCTAATTTGATGGTGATGTATAGGAAGATAAGCAAGGCAGAGTTTACATGTCCTAGATGGTTCCCAAGAGGAGTTCGGGGGCTATTGAGAAAGATGTTGGATCCAAATCCAAACACTAGGATTTCCATAGATGAGATTAAGCAATGTTCTTGGTTTAGGAAGTGGCCAAATGGTATACAGACAACACAAGAAGGGGAAAACAGGAGTGTCTCTCCTTCAATTACAAATCATTCTGAACAATATGGTGATGAAAGTAATGGCCTAGCAGCAGAAGCAAGGCAAGAGTCAGTTGTGCCAGTAAGTATAAATGCCTTTGATATAATCTCCCTCTCACCTGGGTTTAATCTTTGTGGATTCTTTGAAAACAGCTTTCAGAAAAGGGAAGCAAGATTTACTTCAAGACAACCAGCATCTCTCATCATCTTCAGGCTGGAAGAAATTGCAAATCGGCTGAAGATGAAAATAAAGAAAAGGGCTGCCGGTTTGTTGAAATTAGAGAACCTTCATGAAGGTAGGAAGGGGATCTTATCCATTGATGCAGAAATCTTTGAGGTTACTCCACTTCTGCACTTGGTGGAGGTGAAGAAATCAAATGGAGATACGCTGGAATATGAGAAAATACTGAAAGAAGCCATAAGGCCTGCTCTTAAAGATATTGTTTGGGTATGGCAAGGTGACCAACAACAATAA	1341	0.399	MSPRENKSNILMQKYELGRLLGKGTFGKVYYGRSTIINQSVAIKVIDKNKVIKAGQVDHVKREISIMRLVKHPNVIELFEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEDVAHKYFRQLVNAVEFCHSRGVCHRDIKPENILLDENDNLKISDFGLSALAESKHQDGLLHTACGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYIPFRDPNLMVMYRKISKAEFTCPRWFPRGVRGLLRKMLDPNPNTRISIDEIKQCSWFRKWPNGIQTTQEGENRSVSPSITNHSEQYGDESNGLAAEARQESVVPVSINAFDIISLSPGFNLCGFFENSFQKREARFTSRQPASLIIFRLEEIANRLKMKIKKRAAGLLKLENLHEGRKGILSIDAEIFEVTPLLHLVEVKKSNGDTLEYEKILKEAIRPALKDIVWVWQGDQQQ*	447

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vra6g0847	446	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
Vra6g0847	446	ProSiteProfiles	Protein kinase domain profile.	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vra6g0847	446	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	5	445	-	-
Vra6g0847	446	MobiDBLite	consensus disorder prediction	279	303	-	-
Vra6g0847	446	MobiDBLite	consensus disorder prediction	279	300	-	-
Vra6g0847	446	ProSiteProfiles	NAF domain profile.	314	338	IPR018451	GO:0007165
Vra6g0847	446	SUPERFAMILY	Protein kinase-like (PK-like)	11	298	IPR011009	-
Vra6g0847	446	SMART	serkin_6	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vra6g0847	446	CDD	CIPK_C	320	434	-	-
Vra6g0847	446	Pfam	Protein kinase domain	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra6g0847	Vra-Chr6	8645221	8647779	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra6g0847	5	446	CBL-interacting serine-threonine protein kinases	AT5G58380	64.901	0.0	599

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vra6g0847		Pkinase	3.9e-75	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra6g0847	-		K07198	gmx:100779316	785.408

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Vra6g0847	6	8645221	8647779	Vra6g0847	6	8645221	8647779	ECH
Vra6g0847	6	8645221	8647779	Vra10g0449	10	10207009	10209337	ECH
Vra4g0659	4	12259117	12262920	Vra6g0847	6	8645221	8647779	ECH
Vra6g0847	6	8645221	8647779	Vra6g0847	6	8645221	8647779	PCT

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