Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0845 ATGCCGGAAATTGAGCAGGCGGCGGCGGAGAGCACCGTCTTGTTTGAAAAATACGAGGTGGGAAGGCTCCTAGGATGCGGCGCGTTCGCGAAGGTGTACCACGCGCGTAACACCAGCACGGGGCAAAGCGTGGCAGTGAAAGTGGTAAGCAAGAAGAAACTAGCCGCAACGGGTATGGCCTCCAACGTGAAGCGCGAGATTGCCATCATGAGCCGTCTTCACCACCCCAACATCGTGAAACTCCACGAAGTGTTGGCGACCAAGACGAAAATCTACTTCATCTTGGAATTCGCGAAAGGAGGCGAGCTCTTCGCGAGAATCGCGAAAAGTCGATTCGGCGAAGATCTCGCGCGACGGTTTTTCCAGCAGTTGATCTCCGCCGTCGGGTACTGCCATGCGCGGGGCGTTTTCCACCGCGACTTGAAGCCGGAGAATCTACTGCTGGACGAGCAGGCGAACCTCAAAGTCTCCGACTTTGGACTCGGCGCGGTGAAGGAGCAGATGGAGGTGGATGGGATGCTGCACACGCTATGTGGGACCCCTGCTTACGTGGCACCGGAGATTTTGGCGAAGAAGGGTTACGACGGGGCTAAAGTTGATGTTTGGTCTTGTGGGGTTATTCTCTTTGTTCTTGTGGCTGGGTATCTACCGTTCAATGACCCGAATCTTATGGTGATGTACAGGAAGATTTACAAGGGGGAGTATCGATGTCCGAGGTGGTTTTCGACGGAGTTAAGGAGGTTTCTGGCGAGGTTATTGGATACGAATCCCGAGAAGAGGATAACCGTCGATGAGATTTTGAAGGAGGAGTGGTTCAAAAAGGGGTACAAGGAGGTTACATTTGGCGATTTGGGTTTGGAGTGGAAGAGTGAAGGTGATGATGTGAAGGATTTGAACGCGTTTGATATAATTTCTTTCTCCACAGGCTTGAATCTCTCCGGTTTGTTTGATTCGTTGAAGGAGGTGGAAGAAGGAGAGAGGTTTCTGCTTAAGGAGTCGCCGGAGAAGGTGGTGGAGAAGGTAGTTGCGGCGGCGGCTTCTGTGGAGGGTATTATCGTGCGGAGGAGGAAGCAGTGTGGGGTGGAGTTGGAGGGGTGTGATGGTAATTTCGCAGCTTTGGTGGAGGTTTACCGGTTATCGGCGGAACTGGTTGTGGTTGAGGTGAGAAGGAGGGATGGGAATGGCGGAGTTTTCAGGGATGTGTGGAGCAATAAGCTGAGGCCGTATCTCTGTGCTGCCAGTAGCAGTACGACGTCGGATCGGGAGGAAACCGGTGCGCAGCCGGTTGCCGGTGAATCATGA 1302 0.5346 MPEIEQAAAESTVLFEKYEVGRLLGCGAFAKVYHARNTSTGQSVAVKVVSKKKLAATGMASNVKREIAIMSRLHHPNIVKLHEVLATKTKIYFILEFAKGGELFARIAKSRFGEDLARRFFQQLISAVGYCHARGVFHRDLKPENLLLDEQANLKVSDFGLGAVKEQMEVDGMLHTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVILFVLVAGYLPFNDPNLMVMYRKIYKGEYRCPRWFSTELRRFLARLLDTNPEKRITVDEILKEEWFKKGYKEVTFGDLGLEWKSEGDDVKDLNAFDIISFSTGLNLSGLFDSLKEVEEGERFLLKESPEKVVEKVVAAAASVEGIIVRRRKQCGVELEGCDGNFAALVEVYRLSAELVVVEVRRRDGNGGVFRDVWSNKLRPYLCAASSSTTSDREETGAQPVAGES* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0845 433 Pfam NAF domain 297 348 IPR004041 GO:0007165
Vra6g0845 433 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 422 - -
Vra6g0845 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Vra6g0845 433 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0845 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0845 433 ProSiteProfiles NAF domain profile. 293 317 IPR018451 GO:0007165
Vra6g0845 433 SUPERFAMILY Protein kinase-like (PK-like) 14 279 IPR011009 -
Vra6g0845 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vra6g0845 433 PANTHER - 1 422 - -
Vra6g0845 433 Gene3D Transferase(Phosphotransferase) domain 1 8 297 - -
Vra6g0845 433 Gene3D Kinase associated domain 1, KA1 298 413 - -
Vra6g0845 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0845 433 CDD CIPK_C 299 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0845 Vra-Chr6 8621577 8623385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0845 1 419 CBL-interacting serine-threonine protein kinases AT2G30360 60.829 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra6g0845 Pkinase 3.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0845 - - gmx:100815088 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0845 6 8621577 8623385 Vra6g0845 6 8621577 8623385 ECH
Vra6g0845 6 8621577 8623385 Vra6g0845 6 8621577 8623385 PCT