Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0838 ATGGATTATAACATGATCTCATTCTTACCCTTTTTTCTATATTCATTGAGTTTCATCCTTTTTGTTTCACAGTTTCTTAAAGTGAGAAACAGATCCAAAACCTCAGTGAAAAGATTGAAGCTTCCCCCAGGGCCATGGAAGCTACCTGTCATTGGAAGCTTACACCACTTAGTTGGTTCTCTACCACATCATCGCATGAGAGAACTTGCTAAAAGACATGGTCCTCTCATGCACCTACAAATTGGTGAGGCATCAGCCGTCGTGGTTTCTTCTCCAGAAGTGGCGAAAGATGTCCTGAAAACCTATGATGCCAACTTTGCTCATAGACCCCATCAAATTGGCGCAGACATCATGTGTTATGGCTCCACTGACATTGCCACTGCACCATATGGGGGGTATTGGAAGCAGCTAAGAAGAATATGCTCACAAGAGCTTCTAAGCAACATACGTGTGAGGTCATTTCGATCAATAAGAGAAGAAGAAGTGCTGAATTTAGTAAGATATATTGAGACCAACACTGGTACTTGTGTGAACCTCAGTGAGAAAGTCTCATGCCTGACAAATGCCATCACTGCAAGGGCAGCTTTTGGTGAAGAATGCAAGGATCAAGAAGAGTTCATTTCCCTTGTCAAGAAACTTGTGCAAATGGCCGAACGTTTAGCTATTTTTGATTTGTTCCCTTCTTACAAATGGCTTCATGTGATCAGTGGGCAGAAACCTATATTGGAGAAGTTGCACAGAAAATATGATGTAATAATTGGAAACATCATTACAGAGGCAGAAAAAAATATTGGTGAAGTAGAGGTTAATAATACTCTCCTCTCAGTTATTCTAAATTTCAAAAATCAAGGTGGCCTCGAATATCCTTTGACAATCGATAACATCAAGGCTGTGATGTTGACCCTGTTTGCTCCTGGAACTGATACATCATCTGCAATTATAGAATGGGCCATGTCAGAGATGTTGGAAAACCCAAAAGTAATGAACAAAGCTCGGGAAGAAGTTAGAAGAGTTTTTGGTAGCAAAGGATACATGAATGAAGAATCACTTGAAGAACTAAAATATTTGAAAGCAGTGATCAAAGAAACACTAAGATTACACCCTCCTATCTCTCTTCTTCTTCCAAGGGAATGTAGAGAAACTTGTGAGGTGAAAGGGTATACAATACCTGCTGGGACTAGAGTGATAGTAAATGCATGGGCCATCGCAAGAGACCCTGATTATTGGAATGATCCAGAGAAGTTTTATCCTGAGAGATTCATGAACAGTGAAATCGATTATAAAGGGTCCCATCATGAATTCATGCCCTTTGGTGCTGGAAGGAGAATGTGTCCTGGCATGTCTTTTGGGATAAATATAATTGAACTTTGTCTTGCACAACTACTTTACTATTTTAATTGGGAACTTCCATATGGAAACAAGGAAAACTTGGAAATGACTGAAGCTTTGGGAACCTTCTCGAGAAGAAAAACGGATTTAGTCGTAGTTCCCATTTCTTACAATCCTCTTCCTATTTCATCAAACCTTAAATTCTAA 1536 0.3965 MDYNMISFLPFFLYSLSFILFVSQFLKVRNRSKTSVKRLKLPPGPWKLPVIGSLHHLVGSLPHHRMRELAKRHGPLMHLQIGEASAVVVSSPEVAKDVLKTYDANFAHRPHQIGADIMCYGSTDIATAPYGGYWKQLRRICSQELLSNIRVRSFRSIREEEVLNLVRYIETNTGTCVNLSEKVSCLTNAITARAAFGEECKDQEEFISLVKKLVQMAERLAIFDLFPSYKWLHVISGQKPILEKLHRKYDVIIGNIITEAEKNIGEVEVNNTLLSVILNFKNQGGLEYPLTIDNIKAVMLTLFAPGTDTSSAIIEWAMSEMLENPKVMNKAREEVRRVFGSKGYMNEESLEELKYLKAVIKETLRLHPPISLLLPRECRETCEVKGYTIPAGTRVIVNAWAIARDPDYWNDPEKFYPERFMNSEIDYKGSHHEFMPFGAGRRMCPGMSFGINIIELCLAQLLYYFNWELPYGNKENLEMTEALGTFSRRKTDLVVVPISYNPLPISSNLKF* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0838 511 PANTHER CYTOCHROME P450 71B11-RELATED 10 502 - -
Vra6g0838 511 Gene3D Cytochrome P450 34 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506|GO:0016705
Vra6g0838 511 Pfam Cytochrome P450 42 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 10 502 - -
Vra6g0838 511 SUPERFAMILY Cytochrome P450 39 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PRINTS E-class P450 group I signature 398 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0838 511 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0838 Vra-Chr6 8479455 8481341 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0838 8 497 Cytochrome P450 AT5G07990 39.761 2.22e-119 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0838 - K23807 gmx:100779851 785.408