Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0832 ATGGGGAACAACAGGTTTAAGTTGTCAGATATGATGCCAAATGCTTGGTTTTACAAGCTCAAAGATATGAGCAGATCAAGAAAGAGAAATGGTTCTCATGTAATGAAGAGTAAAGTATCTTCACCAACAACATCTCAAAGGTCGGTGCCAACATATTCACACTATTTCTCCTCTGAGCCGATCAGAGCTGGTAAGCTATACAACACTCCCATTCACACCAGAGACTTGGACATGCCATTCACTGATTCACCTAGAAGGTCATCCAAGAGAAGGACTAGGAGAAAAACCATTTACAAGCCTTCTCCCACTGTTGTTTCTTCGTCTTTCGTACCAACTTCCAACTATGATTCCACCAATCATTGGATCAAATCATACCAAGATCAGTCACCAGATTACGATGTGTCTTCAGTTGAAAGCTCTTCTGAATCTGATCTCCATCAATATGCTTATTCTGAGTCTGAATGTGACAGTTTTTCTGTTCCTGATTTACTTAATGGAATGGCCCCTAATGGCAGCTGCAGAGTTAGCTCTTCCACTAATGACATAATCATTGACATGAACAACGACTCCTTCCTTGGGAACTCTGAAAACCAAGATGGGTTTGATGCAATTTCACAGCTGGGTCTTGCTCCAATATTGACAAAGCCAGTGAAGTTTGATGACAAGATCATTGAAGCCACTGAGTCGAGAAGTTCAACTGAATGGGATGAGCTGCAGGATGATGAGTCTTTCTCAATTGAAATTAACAAAGAGGAAGGCAACAGAACTCAAAGGAGGAGAAAAAGCAGTCACAGAAAGCCCTTCGCTAATTCTTCTGGCATAAGGCTTAGAATCAATTCTCCAAAACTTGCTAGCAGAAAAATTCAAGCCTGTGCAAGAAGGAGTGTGTCATCCACTGCAAGCAGAACCTCAAGGGGCACAGGCTTTCCTGATGGCTTTGCTGTTGTGAAGTCCTCATTCGATCCTCAGAGTGACTTCAGGGAATCAATGGTGGAGATGATTGTGGAGAACAATATCCGAGCATCCAAAGATTTGGAGGACCTACTTGCCTGCTACCTTTCCCTCAATTCAAGTGAATATCATGATCTCATTGTTAAAGCATTTGAGCAAATTTGGTTTGACTTGGCTCAACTTAGAATGTAA 1143 0.4182 MGNNRFKLSDMMPNAWFYKLKDMSRSRKRNGSHVMKSKVSSPTTSQRSVPTYSHYFSSEPIRAGKLYNTPIHTRDLDMPFTDSPRRSSKRRTRRKTIYKPSPTVVSSSFVPTSNYDSTNHWIKSYQDQSPDYDVSSVESSSESDLHQYAYSESECDSFSVPDLLNGMAPNGSCRVSSSTNDIIIDMNNDSFLGNSENQDGFDAISQLGLAPILTKPVKFDDKIIEATESRSSTEWDELQDDESFSIEINKEEGNRTQRRRKSSHRKPFANSSGIRLRINSPKLASRKIQACARRSVSSTASRTSRGTGFPDGFAVVKSSFDPQSDFRESMVEMIVENNIRASKDLEDLLACYLSLNSSEYHDLIVKAFEQIWFDLAQLRM* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0832 380 ProSiteProfiles OVATE domain profile. 315 374 IPR006458 -
Vra6g0832 380 PANTHER TRANSCRIPTION REPRESSOR OFP1-LIKE 3 379 - -
Vra6g0832 380 Pfam DNA-binding domain 1 42 IPR025830 GO:0003677
Vra6g0832 380 MobiDBLite consensus disorder prediction 229 271 - -
Vra6g0832 380 Pfam Transcriptional repressor, ovate 319 375 IPR006458 -
Vra6g0832 380 MobiDBLite consensus disorder prediction 27 52 - -
Vra6g0832 380 MobiDBLite consensus disorder prediction 229 258 - -
Vra6g0832 380 MobiDBLite consensus disorder prediction 72 95 - -
Vra6g0832 380 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 313 376 IPR006458 -
Vra6g0832 380 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 379 IPR038933 GO:0045892
Vra6g0832 380 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0832 Vra-Chr6 8404971 8406501 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vra6g0832 Ovate 3.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0832 - - gmx:100780926 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0832 6 8404971 8406501 Vra6g0832 6 8404971 8406501 ECH
Vra6g0832 6 8404971 8406501 Vra6g0832 6 8404971 8406501 PCT