Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0831 ATGGCAGAACATTGTTATGTGGAAACCGACCCAACTGGTCGTTATGGCAGGTTTGGAGACGTTCTTGGAAAAGGGGCAATGAAGACTGTGTACAAAGCAATTGATGAGGTTCTTGGAATTGAGGTAGCATGGAACCAAGTCAGACTCAACGAGGCCCTTCGCACTCCTGAAGATTTGCAGAGGCTTTACTCAGAGGTTCATCTCCTCAGTACCCTCAAGCATCAGTCCATCATAAGATTCTACACTTCTTGGATTGATGTTGATAACAGGGCCTTCAACTTTATCACAGAATTGTTCACATCAGGGTCACTTAGAGAATACAGGAAGAAATATGAGCGTGTCAGCATACAAGCTATAAAGAATTGGGCTCGCCAAATCTTACAAGGTCTTGTTTATCTACATGGCCATGATCCACCAGTTATCCACAGGGACCTTAAATGTGATAACATATTTGTTAATGGTCATCTTGGACAAGTAAAAATTGGTGACCTGGGACTTGCTGCAATTCTTCGTGGATCCCAATCAGCACACAGTGTCATAGGTACTCCTGAGTTCATGGCACCAGAGTTGTACGAGGAAGAATACAATGAACTTGCTGATGTGTACTCATTTGGCATGTGTGTGTTGGAAATGCTTACATCGGAATATCCATATAGTGAATGTTCTAATCCAGCCCAAATCTACAAGAAAGTGACATCGGGAAAACTACCAATGGCGTTTTTCCGGATTGAAGACATGGAAGCACAAAGGTTTATTGGAAAATGCTTGCTACCTGCAGAAAAGAGGCCTTCGGCAAAAGAATTGTTGCTTGACCTGTTTCTTGCATCTGATGATCCATCATCAACAACGAAATTTGCAATTCAGAAGCCATTTTTAAATGCCACTGAGATGGAGAAACTACAATTAAATGATGATCTTCCGAGGACTGGAATGAAAGTGATAGGAAAACTGAATCCTGAAGATGATACTATCTTTCTCAAAGTACAAATTTCTGATAAGAATGGTTCTGTTAGGAATGTATTCTTTCCCTTTGACATTTTCAATGACACCCCTATTGATGTTGCAACTGAGATGGTGAAAGAGTTGGAGATTTCTGATTGGGAACCTTTTGAGATTGCAAATATGATTGATAGAGAGATATCTGCTCTGCTACCTCAGAAGAGGCAAACTAGCTGTTCAGATGCCTTCCACACATTCAGTTATATAGATGATGATGATTGTGATGATAATGATGCACCTCATCATCATTTTCGCTCCTTCTCTTCAAGTTCATCATTCCAAGAATCAATGCCAGATTTTGTCAGTAAAGCTGAGGAAATATCAAGTGGATATTATTGGCTCCATGATGATTCACATGATGATACCAGTTCACGATGCTCTTCACAGGGGACATATTCCAACCTGAATTACTCTTCTGTGGATGATCATCAGGATCAGTACAATATGCCTTCTTTGAGAAAAGATAAACTTCCCATCATGAAGAGTCACTGCAAGGGCAAAAAGGTTTCCCCTGGCGAAGACTTGAGCAATTTCAACCAATGTAAATTCATGGCAGGATCACAGGTTCCTTTTACTAGTAAAAGTAAGATGATGATGAACAATCAAAGGTTAACAAGGAACAGGTCATTGATTGATATAAGGAGCCAACTATTACACCGATCACTGGTTGAGGAGGTCAACAAAAGAAGGTTGTTCAAGACAGTTGGTGCTGTGGAAAATATTGGATTTCAGGCACCTTGTGATGTTACAACAAAAAGGTCACATCATGTATCTGCTGCTAGGAATGAGAACTGTTCAAGGAGGGGCAAGGGGGACAAAAATAAGAGATGA 1830 0.4055 MAEHCYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEALRTPEDLQRLYSEVHLLSTLKHQSIIRFYTSWIDVDNRAFNFITELFTSGSLREYRKKYERVSIQAIKNWARQILQGLVYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQSAHSVIGTPEFMAPELYEEEYNELADVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPMAFFRIEDMEAQRFIGKCLLPAEKRPSAKELLLDLFLASDDPSSTTKFAIQKPFLNATEMEKLQLNDDLPRTGMKVIGKLNPEDDTIFLKVQISDKNGSVRNVFFPFDIFNDTPIDVATEMVKELEISDWEPFEIANMIDREISALLPQKRQTSCSDAFHTFSYIDDDDCDDNDAPHHHFRSFSSSSSFQESMPDFVSKAEEISSGYYWLHDDSHDDTSSRCSSQGTYSNLNYSSVDDHQDQYNMPSLRKDKLPIMKSHCKGKKVSPGEDLSNFNQCKFMAGSQVPFTSKSKMMMNNQRLTRNRSLIDIRSQLLHRSLVEEVNKRRLFKTVGAVENIGFQAPCDVTTKRSHHVSAARNENCSRRGKGDKNKR* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0831 609 SMART serkin_6 16 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0831 609 Pfam Protein kinase domain 20 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0831 609 CDD STKc_WNK 14 274 - -
Vra6g0831 609 Gene3D Transferase(Phosphotransferase) domain 1 99 279 - -
Vra6g0831 609 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 3 605 - -
Vra6g0831 609 ProSiteProfiles Protein kinase domain profile. 16 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0831 609 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 605 - -
Vra6g0831 609 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Vra6g0831 609 MobiDBLite consensus disorder prediction 584 609 - -
Vra6g0831 609 SUPERFAMILY Protein kinase-like (PK-like) 17 305 IPR011009 -
Vra6g0831 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vra6g0831 609 MobiDBLite consensus disorder prediction 587 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0831 Vra-Chr6 8399132 8403536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0831 6 585 MAP Kinase Kinase Kinase AT5G58350 60.445 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vra6g0831 Pkinase 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0831 K08867 - gmx:100272203 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0831 6 8399132 8403536 Vra6g0831 6 8399132 8403536 PCT