Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0829 ATGGCAATCCGTAGATATTCAACTGCAGTCTTTCTTCTCATTTCTGTGTTTGCTGGAACGCAGTTGCAGGGTGCCGCTGCTACTGATCGTGGTTGGGAGGGTAGCCATGCTAGCTTCTATACTGGTTCTTCTAAGACCATGGGAGGTGCATGTGGTTACGGGGATGTGATCGCAGAGGGATACGGAACTGATACTACAGCTCTAAGCAGTGCTTTGTTCAACAATGGGTTCTCTTGTGGGGCATGTTTTGAACTTAGGTGTGTTAATGACGCAAAATGGTGCAAACCTGCCACTGTTGTTGTTACTGCTACAAACTTCTGCCCTCCAGGTGGTTGGTGCAGCCCTCCTTCACAACACTTCAACTTGGCTGAATCAGCCTTCCTCAAAATTGCTCAGTTCAGGGCTGGAATTGTACCTGTGCAATTTAGAAGAGTGGCTTGTGTGAAAAAGGGAGGAATAAGGTTCACAATTAATGGACACTCTTACTTCAACCTGGTTTTGATCACCAACGTAGCGGGTGCAGGGGATGTCAATGTAGTCTCCATCAAAGGGTCCAAAACAGGGTGGCAACCCATGTCAAAGAACTGGGGGCAAAATTGGCAGAGCAACTCCTACCTCAATGGACAGAGTCTCTCTTTTCAAGTCACCACCAGTGACCGTAGAACTGTCACAAGCTACAACGTGGCACCTGCTAATTGGCAGTTTGGTCAGACCTTCGAGGGGCGTCAATTTTAG 735 0.4789 MAIRRYSTAVFLLISVFAGTQLQGAAATDRGWEGSHASFYTGSSKTMGGACGYGDVIAEGYGTDTTALSSALFNNGFSCGACFELRCVNDAKWCKPATVVVTATNFCPPGGWCSPPSQHFNLAESAFLKIAQFRAGIVPVQFRRVACVKKGGIRFTINGHSYFNLVLITNVAGAGDVNVVSIKGSKTGWQPMSKNWGQNWQSNSYLNGQSLSFQVTTSDRRTVTSYNVAPANWQFGQTFEGRQF* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0829 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Vra6g0829 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Vra6g0829 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Vra6g0829 244 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Vra6g0829 244 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Vra6g0829 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Vra6g0829 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Vra6g0829 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Vra6g0829 244 PANTHER EXPANSIN-A15 9 244 IPR002963 GO:0009664
Vra6g0829 244 PANTHER EXPANSIN 9 244 - -
Vra6g0829 244 Gene3D - 17 147 IPR036908 -
Vra6g0829 244 SMART dpbb_1 65 142 IPR007112 -
Vra6g0829 244 SUPERFAMILY Barwin-like endoglucanases 31 170 IPR036908 -
Vra6g0829 244 Pfam Lytic transglycolase 65 142 IPR009009 -
Vra6g0829 244 Gene3D - 151 244 IPR036749 -
Vra6g0829 244 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Vra6g0829 244 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Vra6g0829 244 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Vra6g0829 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Vra6g0829 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Vra6g0829 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Vra6g0829 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Vra6g0829 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Vra6g0829 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Vra6g0829 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0829 Vra-Chr6 8346204 8348563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0829 11 244 Expansin Gene Family AT2G40610 67.347 1.77e-121 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0829 - - gmx:100777044 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0829 6 8346204 8348563 Vra6g0829 6 8346204 8348563 PCT