Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0826 ATGTTAGAAGTGGAGAGAAAGAAGGAAGAGAGTTCAATTCTGTTGGGTGACAAAACTATTAGCTTTTGGGAACAGATGCAAGATCCATCTTCAAACCCTAATTCCAATTCCAATCCCAATCCTCACAATGCCAATGCTGCATCTCAGCTACCACGACCGGCGCCGTCAACAGCGGCCACCGCCGCCGGCGCCTCCTCGTCCTCGATTTTCGCACGCTCCGGCGGGGCTCACCACCGGCGAGCTCACTCGGAGGTGAGTTTCCGGCTTCCGGACGACATGATGGACCTGTCGCCGTCGGATCCGTTTGCCGGCGGGTCATCTACGGCGAGTATGGAGGAGATCGGATCAGAGGACGACCTGTTCTCGACGTACATTGACGTGGACAAGCTGGGAGGTGCAAACGGGTCGGGCGGAGCGGGAAACGGAGCGGATCCGACCGGAGAACGGGAGAAAAGTCCGGCGAGGGCGCGGCACCGGCACAGTAATTCCGTCGATGGCTCTTCATCTTTTGCCGAAATTATGGAAGCTAAGAAGGCTATGCCTCCTGATAAGTTAGCTGAGCTATGGACAGTTGATCCCAAGCGTGCTAAGAGAATACTTGCAAATCGGCAATCCGCTGCTCGATCTAAAGAGAGAAAAGCTCGCTATATACAAGAACTCGAGCGCAAGGTTCAAACACTTCAGACCGAAGCCACAACCCTTTCTGCTCAGTTGACATTATACCAGAGGGACACAACAGGCCTGAGTACTGAAAATACCGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAGCAAGCACAGCTTCGTGATGCTCTTAATGAAGCATTGAAAAAGGAAGTTGAGAGACTTAAAGTTGCTACTGGTGAGATGATGAGCCACACTGAATCCTTTAATTTGGGAATGCACCATATGCCGTTTACGGGATCAACTTTCAGTCCAATCCTGTCACAATCAGGTCCTTCTGGTCACCAGAACATCCAGTTGTCATCATTTGGTCACTCCCCCTCAACAATGCCAACTCATCAACTGCATCAAACTAGTTCTCATACACTATCAGAAATATTGCAAAATGACCAGCTTGGTCGTTTCCAGGGGCTTGACATTAGTAGCAAAGGATCAACTCTGGTGAAGTCTGAAGGCCCCTCACTGTCTGCAAGTGAGAGTAGCACTACCTTTTGA 1179 0.5081 MLEVERKKEESSILLGDKTISFWEQMQDPSSNPNSNSNPNPHNANAASQLPRPAPSTAATAAGASSSSIFARSGGAHHRRAHSEVSFRLPDDMMDLSPSDPFAGGSSTASMEEIGSEDDLFSTYIDVDKLGGANGSGGAGNGADPTGEREKSPARARHRHSNSVDGSSSFAEIMEAKKAMPPDKLAELWTVDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMMSHTESFNLGMHHMPFTGSTFSPILSQSGPSGHQNIQLSSFGHSPSTMPTHQLHQTSSHTLSEILQNDQLGRFQGLDISSKGSTLVKSEGPSLSASESSTTF* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0826 392 Gene3D - 193 245 - -
Vra6g0826 392 SUPERFAMILY Leucine zipper domain 194 245 IPR046347 GO:0003700|GO:0006355
Vra6g0826 392 MobiDBLite consensus disorder prediction 310 349 - -
Vra6g0826 392 SMART brlzneu 190 254 IPR004827 GO:0003700|GO:0006355
Vra6g0826 392 MobiDBLite consensus disorder prediction 1 112 - -
Vra6g0826 392 MobiDBLite consensus disorder prediction 148 162 - -
Vra6g0826 392 PANTHER ATBZIP TRANSCRIPTION FACTOR 31 389 - -
Vra6g0826 392 Coils Coil 210 237 - -
Vra6g0826 392 MobiDBLite consensus disorder prediction 372 392 - -
Vra6g0826 392 Coils Coil 258 289 - -
Vra6g0826 392 CDD bZIP_plant_RF2 195 244 IPR044759 GO:0003700|GO:0006355
Vra6g0826 392 MobiDBLite consensus disorder prediction 132 169 - -
Vra6g0826 392 Pfam bZIP transcription factor 194 249 IPR004827 GO:0003700|GO:0006355
Vra6g0826 392 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 255 IPR004827 GO:0003700|GO:0006355
Vra6g0826 392 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 31 389 - -
Vra6g0826 392 MobiDBLite consensus disorder prediction 23 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0826 Vra-Chr6 8284132 8287012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0826 26 392 bZIP Transcription Factor Family AT2G40620 53.827 9.40e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra6g0826 bZIP_1 6.4e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0826 - - vra:106763153 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0826 6 8284132 8287012 Vra6g0826 6 8284132 8287012 PCT