Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0824 ATGGAGCTCGATGTTTGCATGAACGGTGCTTGCAAGAATGGCTATGCGAGAGAGTGGAAGAAAGGGTGGCCTCTGCGATCGGGTGGATTCGCTAGGCTCTGCGATAAGTGCGGATCTGCATATGCCAATTCAATTTTCTGTGAAAAATTCCACCTACATCAAACTGGTTGGAGAGAGTGCAACTTTTGCAACAAGTCTATCCACTGTGGATGCACAATATCAAGGTTTTCTTTTGAGTACCTTGATTTTGGAGGTATAGGTTGCTTAACCTGTTTGAGGGCTTCTCCATTTCCTTTGATACAGGAGACTGGAAACTCTATTAGGTCTATTCGATCAGTAAAAAATCATGCTAGTGATCGCCATACTGAACATATTGATGATAGACTATTCCTTGATGGTTCTAGCAAAAGAAAACCTATGCACATGCGTAGAATTGTGGATGGTAGAGAATCCAGCCGTTGGCCTCAAGTTAAGAGAGATGACATACAATCCTGTATTGATCTAAACAGAGAAGAAATGAGATTTTCAAATGTGATGAAACCGTCTAATCATTCATTAAAGTTTACTGCATTAGAAAATAACAGACCAACATGGGAGAATAGAAGTATGCACAGATCAAGTTCAATGAATATTTCTCTGGGAGCCTCATCAGGAAACTCTGTGCTACCTTCTGCTTTAGAGATTGCAGAAGGGAGATTTGATGGTAAAACATCTTCTTCTTCCTTTCATAAAGGGAAAAGACCTCTCTCCATTATGCCTAAACCATTGATGAATGCAATAAACATGAATATGGAATCAAGCAATGGAATGATTTCTCAAGAGCGTGTTGCACGGCCACCTACTGATGGAAAAGGCAAGAATATGTTACTTTCTCGATACTGGCCTAGGATTACAGACCAGGAGCTTCAGCAATTGTCCGGAGATTTGAAGTCTACTATAGTGCCTTTATTTGAGAAGGTACTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTGCCAAAATCATGCGCTGAGGCTTACTTTCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGCATATGAAAGATGTGAAGGGAAATGAGTGGACATTTCAGTTTAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTAGAGGGAGTAACCCCTTGCATACAGGCCTTGAAATTAAATGCTGGCGACATTGTGATATTTAGTCGAATAGATCCTGGAGGCAAATTTGTTTTGGGTTTTAGAAGGGCATCAGATTCTACAGATACACAGGATGCTTCTGCCGCTCATTCCATTGTTTTATCGACAAAGGAAACAACCTTTTCTGGTGCAACTGCAGGAAATAGTTATCATGATCTTCTCCAGACAAGGAAAGGGAATGGTGATCCTTACTTAAATAAATGTTCAGAGCATTTCCGTTTGAGTACTGGCATTGCTGAGCGTCTTCGAACTGAAAATTCTGAGATGGTAAACAAAGATTCGGTGCAACTACCAATTTCAGTTTCAGAGAAGACTCAAAATATTGGACCTATGTGCAAGAGGTTGCTCATACACAATGAAGATGCCATGGAGTTGAGAGTTACATGGGAAGAAGCTCAGGACTTGCTTTGTCCAGCGCCTAGTATCAAGTCCAATATTGTAACAATTGAGGACCAAGAATTTGAGGAATATGAGGAACCCCCGGTCTTTGGAAAGAGAACTAGAATAAATGCTCGTTCATCTGGGTCTTTGAGCCTTGCATCAGAGGAAGTGAGTCCAAAGGAATTAGATAATATATCAGTTATCAGAAAAGGAGTTTTGGATGATGATGGTGATTCATCAGCTGGAGCCACCACCAAATATCCAAGGCACCGTTCAGGATGCATTTGCATTGTGTGCATTCAAGCCTCAAGCGGAAAAGGGAGACATAGCCCTCCCTGCATCACCGTGAAACGCCGTGTGGACACCCTTCTGGCGCGTAAGAAGCAACTCCTTGGTACCCAGAAAGATGATGATATTTATGACGGAGATGAAGGAGATGGTGCATGTCTCTCTGAGAAAGAGGGAAACATAAACAAAGGTTGTCTTAAGAAGGGTGAACTCAGTGCAGGACAAATAGACCTGAATTGTCGTCCCGATCTCGATGAAGACATGCAATTCTTCTTGCCTGTAGATTGCAATGACAATGAAGAGTTGAGAAAGATGCTCACATCATTATCCATCATTATGCAAAGGCTTTGTCGTAGCTTGCGAGTTATAAGTGATAAGGAATTGAAGGAAGCTAACTTGTCAATTGATGAAATGATTATCCTTGTAAATGGTGGATTTGATAGGACTGCAATTTGTGAGGAACTTCAACACAAAGGGACAGTTGCCTCATTGGATACTGAATAA 2373 0.4138 MELDVCMNGACKNGYAREWKKGWPLRSGGFARLCDKCGSAYANSIFCEKFHLHQTGWRECNFCNKSIHCGCTISRFSFEYLDFGGIGCLTCLRASPFPLIQETGNSIRSIRSVKNHASDRHTEHIDDRLFLDGSSKRKPMHMRRIVDGRESSRWPQVKRDDIQSCIDLNREEMRFSNVMKPSNHSLKFTALENNRPTWENRSMHRSSSMNISLGASSGNSVLPSALEIAEGRFDGKTSSSSFHKGKRPLSIMPKPLMNAINMNMESSNGMISQERVARPPTDGKGKNMLLSRYWPRITDQELQQLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEAYFPPISQSEGLPLHMKDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQALKLNAGDIVIFSRIDPGGKFVLGFRRASDSTDTQDASAAHSIVLSTKETTFSGATAGNSYHDLLQTRKGNGDPYLNKCSEHFRLSTGIAERLRTENSEMVNKDSVQLPISVSEKTQNIGPMCKRLLIHNEDAMELRVTWEEAQDLLCPAPSIKSNIVTIEDQEFEEYEEPPVFGKRTRINARSSGSLSLASEEVSPKELDNISVIRKGVLDDDGDSSAGATTKYPRHRSGCICIVCIQASSGKGRHSPPCITVKRRVDTLLARKKQLLGTQKDDDIYDGDEGDGACLSEKEGNINKGCLKKGELSAGQIDLNCRPDLDEDMQFFLPVDCNDNEELRKMLTSLSIIMQRLCRSLRVISDKELKEANLSIDEMIILVNGGFDRTAICEELQHKGTVASLDTE* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0824 790 SUPERFAMILY DNA-binding pseudobarrel domain 314 416 IPR015300 -
Vra6g0824 790 Pfam B3 DNA binding domain 317 417 IPR003340 GO:0003677
Vra6g0824 790 Gene3D - 295 422 IPR015300 -
Vra6g0824 790 ProSiteProfiles B3 DNA-binding domain profile. 317 418 IPR003340 GO:0003677
Vra6g0824 790 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 600 712 - -
Vra6g0824 790 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 576 - -
Vra6g0824 790 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 4 576 - -
Vra6g0824 790 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 600 712 - -
Vra6g0824 790 CDD B3_DNA 315 416 IPR003340 GO:0003677
Vra6g0824 790 SMART B3_2 317 418 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0824 Vra-Chr6 8246070 8256651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0824 3 655 B3 DNA Binding Superfamily AT4G32010 40.847 2.01e-168 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra6g0824 B3 5.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0824 - - vra:106763363 1593.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0435 10 10028795 10035944 Vra6g0824 6 8246070 8256651 PCT