Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0818 ATGTCCGTACACTCAACACTCAACCTCCACCCCATCAACCCCGCCACTCCAAATTCCAATTTTGATCATAACCCACAGACAAAAACCAAGACCAAAACCCAAAGGAGGCTCCTTCGGATCATAATCACCGACCACGACGCCACTGATTCTGACTCCGACCACGAACAACCACAAAACAACCCAACAACCAGGAAACTCAAGAGAGAAATTACCCAAATCAGTATGCACCTTCCTCTCCCGGATAACTCCCTTTCTTCTTGTTCATATTCTTCTGGTTTAGCTTCTGCTTCCTCTTGTTCCTCCGAACAAGTCTCAAAGTGCAGAAGGCCCAAAAAACCTCCACCACCCTCCGAAGCGGCCCGACGCCGCACCAAGTTCCGCGGCGTCCGTCAGCGGCCGTGGGGGCGATGGGCCGCCGAGATCCGCGACCCGACCCGCCGGAAACGCCTCTGGCTCGGAACATTCGACACGGCGGAGGAAGCCGCCACAGAGTACGACAAAGCCGCCGTCAAACTCAAGGGTCCCAACGCCGTCACCAATTTCCCCCTCACAACGCCGCCCCCGGTGGCGGAGTCTCCTTTTGCCGCCATCGACAGCCTCAGCACCGACGGCGGCGCGTCGTACTCCGACTTGGTGGCCTCGCCGACGTCCGTTTTGACCTACGACTGCGACTCGACGCCGTTCGACAGTTTCCATTACGGTGACGTGGACGCGCTCGGGTTCCACATCGACGCGCCGTTAAGACTGGCGGACGTTGGCGTCTCGCTTACGTGTCATCCCTATAAGGAGGAGCAAGAGGCGTTCGATGAATTCGATCTCGACGAGTTCATGAAGTGGCCTTACTAA 846 0.5697 MSVHSTLNLHPINPATPNSNFDHNPQTKTKTKTQRRLLRIIITDHDATDSDSDHEQPQNNPTTRKLKREITQISMHLPLPDNSLSSCSYSSGLASASSCSSEQVSKCRRPKKPPPPSEAARRRTKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPLTTPPPVAESPFAAIDSLSTDGGASYSDLVASPTSVLTYDCDSTPFDSFHYGDVDALGFHIDAPLRLADVGVSLTCHPYKEEQEAFDEFDLDEFMKWPY* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0818 281 MobiDBLite consensus disorder prediction 105 124 - -
Vra6g0818 281 MobiDBLite consensus disorder prediction 99 129 - -
Vra6g0818 281 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Vra6g0818 281 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 24 277 - -
Vra6g0818 281 MobiDBLite consensus disorder prediction 1 65 - -
Vra6g0818 281 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Vra6g0818 281 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Vra6g0818 281 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 277 - -
Vra6g0818 281 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Vra6g0818 281 PIRSF PTI6 7 281 IPR017392 GO:0003700
Vra6g0818 281 MobiDBLite consensus disorder prediction 37 62 - -
Vra6g0818 281 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Vra6g0818 281 MobiDBLite consensus disorder prediction 1 27 - -
Vra6g0818 281 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Vra6g0818 281 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Vra6g0818 281 Pfam AP2 domain 124 174 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0818 Vra-Chr6 8104584 8107097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0818 26 231 AP2-EREBP Transcription Factor Family AT4G27950 41.589 2.40e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra6g0818 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0818 K13434 - gmx:100817278 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0443 10 10117214 10123111 Vra6g0818 6 8104584 8107097 PCT