Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0817 ATGGCAGATATTGCTTCAAATTCATGTATCAATATTATATACCTTATCACCACAAAACTCGCCATGAAGTTCTACTTCCCTCGAGTGCATCCTTTCCTTTTCATGTTTCTTATTCTCTGTCCTACGGTTTTTGCTGACTTAAATTCTGATAAGCAAGCCCTTCTTGATTTTGTTGCTTCTGTCCCCCATCGCCGTGACCTAAAGTGGAATTCAGATACTTCAATTTGTACATCTTGGGTAGGTGTCACTTGCAATCCAAATGGCACCCGTGTTGTTTCGCTCCGGCTTCCTGGAATTGGACTTGTCGGCACCATTCCGGCCAATACACTTGGCAAGATTGACTCACTCAGAAATCTCAGCCTCCGTGCCAACCTACTCAGTGGAAGTCTTCCTCCTGATATTTCTTCTCTTCCTTCTCTACAATATCTTTACCTTCAGCATAATAACCTTTCTGGTAACATACCTACCTCATTGTCCACCCACCTCAATGTACTTGATTTGTCATATAATTCCTTCACCGGTGCTATTCCAAAGACATTGCAAAACTTAACACAACTAACTAGGTTGAACCTCCAGAACAACTCCCTATCTGGTGAGATACCAAATCTCAATGTCACAAAGCTCAGGCACTTGAATTTAAGCTACAACCATTTGAATGGCTCTATCCCTGCTGCTCTTCAGACTTTCCCCAATTCTTCCTTTGAGGGTAACTCTCTATGTGGATTACCTCTAAGGCCATGCTCTGTAGCCCCTCCTGCATCTCCTCCATCATTAACTCCTGTCCCACCAACTCCTTCAAGACACAAAAGTAAATTGAGTAAGGCAGCTATCATTGCAATTGCAGTTGGTGGGGGTGTGCTATTACTTTTAGTAGCTCTCATCATTGTTCTTTGCTGTTTAAAGAAAAAGGATGATGGAAGCCCCAGACCTACTAAAGGCAAGGGTCCTAGTGGTGGGAGAACTGAGAAACCAAAAGAAGAGTTTGGAAGTGGGGTGCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAAGGCAGTTCTTATAATTTTGATCTAGAGGATTTGCTGAGAGCTTCGGCTGAAGTTCTTGGAAAGGGTAGTTATGGTACTGCATATAAGGCTATATTAGAAGAGTCAACAACAGTTGTAGTGAAAAGGTTGAAGGAAGTCGTGGTAGGCAAAAGGGAATTTGAACAGCAGATGGAGATTGTGAGAAGAGTTGGACAGCACCCAAATGTTGTGCCACTTCGAGCTTACTATTATTCCAAGGATGAGAAGCTTTTGGTTTATGACTACATCCCAAATGGCAATCTATCAACCCTCTTGCATGGTAACAGGGCAAGTGGAAGAACTCCATTAGATTGGAACTCCCGAATAAAAATATCTGTTGGAATTGCCAGAGGAATTGCACACGTACATTCAGTTGGCGGTCCAAAATTCACTCACGGAAATGTGAAATCTTCAAATGTCCTCCTCAACCAAGATAACGATGGCTGCATCTCTGACTTTGGCCTGACCCCACTAATGAATGTTCCTGCAACTCCTTCTAGAGCTGCAGGCTATCGTGCCCCTGAGGTGATTGAAACGCGTAAGCACTCTCACAAGTCAGATGTCTACAGTTTTGGTGTTCTCCTTCTGGAAATGCTTACCGGAAAAGCCCCGCAACAGTCTCCAGGACGTGACGACGTGGTCGATCTCCCAAGGTGGGTGCAATCTGTTGTTAGGGAGGAGTGGACAGCTGAGGTTTTTGATGTTGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAGATTGCCATGGCCTGTGTGGCAAAGGTTCCAGATATGAGGCCTACCATGGAGGAAGTAGTGAGAATGATTGAAGAAATCCGGCAATCCGACTCCGAAAACCGGCCATCTTCGGAAGAGAATAGATCCAAGGAGGAATCAACTGCTCAGACTCCATAA 1962 0.4404 MADIASNSCINIIYLITTKLAMKFYFPRVHPFLFMFLILCPTVFADLNSDKQALLDFVASVPHRRDLKWNSDTSICTSWVGVTCNPNGTRVVSLRLPGIGLVGTIPANTLGKIDSLRNLSLRANLLSGSLPPDISSLPSLQYLYLQHNNLSGNIPTSLSTHLNVLDLSYNSFTGAIPKTLQNLTQLTRLNLQNNSLSGEIPNLNVTKLRHLNLSYNHLNGSIPAALQTFPNSSFEGNSLCGLPLRPCSVAPPASPPSLTPVPPTPSRHKSKLSKAAIIAIAVGGGVLLLLVALIIVLCCLKKKDDGSPRPTKGKGPSGGRTEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKREFEQQMEIVRRVGQHPNVVPLRAYYYSKDEKLLVYDYIPNGNLSTLLHGNRASGRTPLDWNSRIKISVGIARGIAHVHSVGGPKFTHGNVKSSNVLLNQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPQQSPGRDDVVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPTMEEVVRMIEEIRQSDSENRPSSEENRSKEESTAQTP* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0817 653 Pfam Protein kinase domain 360 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0817 653 Gene3D Transferase(Phosphotransferase) domain 1 433 652 - -
Vra6g0817 653 CDD STKc_IRAK 363 628 - -
Vra6g0817 653 MobiDBLite consensus disorder prediction 626 653 - -
Vra6g0817 653 MobiDBLite consensus disorder prediction 305 332 - -
Vra6g0817 653 SUPERFAMILY L domain-like 60 231 - -
Vra6g0817 653 MobiDBLite consensus disorder prediction 626 647 - -
Vra6g0817 653 Gene3D Ribonuclease Inhibitor 48 161 IPR032675 -
Vra6g0817 653 ProSitePatterns Protein kinases ATP-binding region signature. 363 394 IPR017441 GO:0005524
Vra6g0817 653 SUPERFAMILY Protein kinase-like (PK-like) 361 636 IPR011009 -
Vra6g0817 653 Pfam Leucine Rich Repeat 162 183 IPR001611 GO:0005515
Vra6g0817 653 Pfam Leucine Rich Repeat 207 228 IPR001611 GO:0005515
Vra6g0817 653 Gene3D Phosphorylase Kinase; domain 1 325 432 - -
Vra6g0817 653 ProSiteProfiles Protein kinase domain profile. 357 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0817 653 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Vra6g0817 653 PANTHER LRR RECEPTOR-LIKE KINASE 15 653 - -
Vra6g0817 653 Gene3D Ribonuclease Inhibitor 162 250 IPR032675 -
Vra6g0817 653 PANTHER OS05G0588300 PROTEIN 15 653 - -
Vra6g0817 653 ProSiteProfiles Leucine-rich repeat profile. 185 207 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0817 Vra-Chr6 8089429 8094234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0817 32 651 Receptor kinase-like Gene Family AT5G58300 70.476 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra6g0817 Pkinase 1.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0817 - - gmx:100818344 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0817 6 8089429 8094234 Vra6g0817 6 8089429 8094234 ECH
Vra10g0445 10 10125726 10130350 Vra6g0817 6 8089429 8094234 PCT