Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0813 ATGTATCTTTCAAAGGGTTGTAGGTGTGAAGTTGTTCTCTGTTTGTGGTTTTGCTGCTATTTCCTATTGGCTGCTAGTCAGGTCACTGACCCCACAGAAGTTGAGGCACTGAGAACCATAAAGAGAAGTTTGATTGATATTAATGGAAATTTGAGCAACTGGGATCGTGGAGATCCATGTACATCCAACTGGACAGGGGTTATGTGCTCCAACACAACATTAGCCGATGGCAATCTACATGTTCTACAATTGCAACTGCTGAATTTGAACCTGTCTGGAACTTTGGCACCAGAGATCGGCAACTTGTCTTATTTGGAAATAGTGGACTTTATGTGGAATGACATAACTGGGAGTATACCGAAGGAGATTGGCAATATCAAAACTTTGAAACTCTTACTACTGAGTGGAAATAAACTAACAGATGATCTGCCTGAAGAGCTTGGCCATCTTCCAGTGCTGGAGAGAATGCAAATTGATGAGAACAATATTACAGGACCTATACCACTATCATTTGCAAACCTGAACAGCACACAACACTTCCACATGAACAACAATTCACTTAGTGGACAAATCCCAGCACAGCTTTCAAAATTAGGAAGCCTTATTCACCTTCTTCTTGACAACAATAACTTGACAGGAAATCTCCCATCCGAGCTCTCTGAGATGCCAAGCTTAATGATACTTCAACTCGATAACAATAACTTCGATGGAAGTAGCATACCAGAATCTTATGCCAACATGCCAAAATTGTTGAAATTAAGCCTTAGGAACTGCAACTTGACAGGACCAGTTCCTGATTTCAGCAGGATACCACACCTTGCTTACCTTGACCTCAGTTTCAATCTGTTGAATGAGTCAATTCCAACCAATAAGCTATCAGACAATATGACAACTATTGACTTATCAAACAACAAGCTCAATGGAACAATTCCATCCTACTTTTCTGGTCTTCCACGTCTTCAGAAATTGTCAATTGCCAACAATGCAATCAGTGGCACTGTTCCTTCTACCATTTGGCAGAACAGGACTTTGAATGCAACAGAGCAACTTATCTTGAACATGCAGCATAATCAACTTACAAGCATATCAGGCACTACAAATCTTCCTTCAAATGTCACACAATATATTGACAATACAAGTTCTCGTCAGTTCAGTACAAATGAGGTTGTTCGAATTAGAGACATGTTCAGAGAATGGGATATTCAGGATAGTGACCTGTTTGGTCCTTATGAACTCTTGGACTTCGTTCTACTGGATATTTACAAGGAAGCGATTACTCCCTCTTCAAGTTCAGGGATAAGCAAAGGTGCACTGGTTGGAATAATCTTAGGTGCAATTGCCTGTGCAGTTACATTATCTGCAATTGTTTCCATTCTTATTTTGAGAGTACGCATGAGAGATTATCGTGCACTTTCCAGACGGCGTAACGCATCTAGGATATCGATGAGAGTTGAAGGTGTAAGATCATTTGATTACAAAGAAATGGCCTTGGCCACAAACAATTTTAACCAGTCTGCTCAAATTGGAGAAGGAGGCTATGGGAAGGTTTATAAAGGACGTCTTCCTGATGGCACAGTTGTTGCCATAAAACGTGCACAGGAGGGTTCACTACAAGGTGAGAGGGAGTTCTTCACAGAAATAGAATTGCTGTCAAGGCTACACCATCGCAACCTTGTGTCTCTCATTGGATACTGTGACGAAGAGGGTGAACAGATGTTGGTTTATGAATATATGCCAAATGGAACTCTAAGGGATCACCTTTCTGCTCATTCAAAAGATGTTCTTAGCTTTTCTCTGAGGTTAAAGATTGCTCTAGGATCAGCAAAAGGTCTTCTATATCTGCACACAGAAGCTAATCCTCCTATATTCCACCGAGACGTGAAGGCCAGCAATATACTGTTGGACTCTAGGTACACAGCAAAAGTTGCTGATTTTGGACTTTCACGTCTTGCTCCAGTTCCAGATATTGAAGGAAACGTACCTGGTTATGTATCCACAGTAGTAAAGGGGACCCCGGGTTATCTTGATCCAGAGTACTTCTTAACTCGTAATTTGACCGATAAAAGTGATGTTTATAGTTTGGGTGTTGTATTTCTGGAACTTTTGACTGCGAGGCCACCAATCTTTCATGGTGAAAATATTATTAGACAGGTTAATATGACATACCAATCTGGTGGAATATCTCGAGTGGTTGATAAACGTATTGAGTCTTACCCATCTGAGTATGCAGAGAGATTTTTGACTTTAGCCTTAAAGTGTTGCAAAGATTCACCAGATGAGAGACCTAAAATGGCAGAAGTGGCTAGAGAGCTTGAATACATCTGTTCTATGTTATCTGATTCAGATAACAAAGGAGCTGAATATGTTACAAGTGATTCTTCTGGTACAATATTCAGTTCACAAGCATCATCATCTATTATAAAGACTCCTTTTATTTCAGGAGATGTTTCAGGTAGTGACCTTGTCAGTGGAAGCATACCAACCATCAAACCAAGATAG 2499 0.4038 MYLSKGCRCEVVLCLWFCCYFLLAASQVTDPTEVEALRTIKRSLIDINGNLSNWDRGDPCTSNWTGVMCSNTTLADGNLHVLQLQLLNLNLSGTLAPEIGNLSYLEIVDFMWNDITGSIPKEIGNIKTLKLLLLSGNKLTDDLPEELGHLPVLERMQIDENNITGPIPLSFANLNSTQHFHMNNNSLSGQIPAQLSKLGSLIHLLLDNNNLTGNLPSELSEMPSLMILQLDNNNFDGSSIPESYANMPKLLKLSLRNCNLTGPVPDFSRIPHLAYLDLSFNLLNESIPTNKLSDNMTTIDLSNNKLNGTIPSYFSGLPRLQKLSIANNAISGTVPSTIWQNRTLNATEQLILNMQHNQLTSISGTTNLPSNVTQYIDNTSSRQFSTNEVVRIRDMFREWDIQDSDLFGPYELLDFVLLDIYKEAITPSSSSGISKGALVGIILGAIACAVTLSAIVSILILRVRMRDYRALSRRRNASRISMRVEGVRSFDYKEMALATNNFNQSAQIGEGGYGKVYKGRLPDGTVVAIKRAQEGSLQGEREFFTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSAHSKDVLSFSLRLKIALGSAKGLLYLHTEANPPIFHRDVKASNILLDSRYTAKVADFGLSRLAPVPDIEGNVPGYVSTVVKGTPGYLDPEYFLTRNLTDKSDVYSLGVVFLELLTARPPIFHGENIIRQVNMTYQSGGISRVVDKRIESYPSEYAERFLTLALKCCKDSPDERPKMAEVARELEYICSMLSDSDNKGAEYVTSDSSGTIFSSQASSSIIKTPFISGDVSGSDLVSGSIPTIKPR* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0813 832 Gene3D Ribonuclease Inhibitor 193 292 IPR032675 -
Vra6g0813 832 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Vra6g0813 832 SMART serkin_6 502 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0813 832 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vra6g0813 832 CDD STKc_IRAK 508 772 - -
Vra6g0813 832 Gene3D Ribonuclease Inhibitor 293 400 IPR032675 -
Vra6g0813 832 Pfam Leucine rich repeat 295 345 IPR001611 GO:0005515
Vra6g0813 832 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 375 - -
Vra6g0813 832 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 380 807 - -
Vra6g0813 832 SUPERFAMILY Protein kinase-like (PK-like) 487 780 IPR011009 -
Vra6g0813 832 Gene3D Phosphorylase Kinase; domain 1 473 577 - -
Vra6g0813 832 Pfam Protein kinase domain 503 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0813 832 SUPERFAMILY L domain-like 45 378 - -
Vra6g0813 832 ProSitePatterns Protein kinases ATP-binding region signature. 508 530 IPR017441 GO:0005524
Vra6g0813 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Vra6g0813 832 Gene3D Transferase(Phosphotransferase) domain 1 578 794 - -
Vra6g0813 832 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 12 375 - -
Vra6g0813 832 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 380 807 - -
Vra6g0813 832 ProSiteProfiles Protein kinase domain profile. 502 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0813 Vra-Chr6 8031881 8046562 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0813 18 784 Receptor kinase-like Gene Family AT5G01950 43.017 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vra6g0813 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0813 - - gmx:100777308 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0813 6 8031881 8046562 Vra10g0448 10 10192674 10206639 PCT