Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0809 ATGTATCTTTGGAAAGGTTGTAAGTTTGAAGAAGTTGTTCTGCTGAGTTTGTGTTTATACTGCTACTTTTTATTCGCTACTGCTTTGATCACTGATCCCACTGAAGTTGAGGCGTTAAGAATCATAAAAGTAAGTTTGATCGATATTAATGGAAATTTGAGCAACTGGGATGGTGGAGATCCATGTACATCTAACTGGACAGGAGTCATGTGCTCCGATACAACATTAGTCGATGGCTATCTACATGTTAAACAACTGCATTTACTGAACATGAACTTGTCTGGAAATTTGGCACCAGAGATTGGCCGCTTATCTTATCTGGAAGTGTTGGACTTTATGTGGAATGACATAACTGGGAGTATACCAAAGGAAATTGGCTTTATCAATCCTTTGAAACTGTTACTCCTAAATGGAAATCAATTAACTGGTGAGTTGCCAGAAGAACTTGGCTTTCTTCCATTCCTGATTCGATTGCAAATAGATCAGAACAATATCACAGGACCTATACCTTTATCATTTGCAAAACTGAACACCACTGTACATTTTCACATGAACAACAATTCACTTAGTGGGCAAATACCACCACAACTTTCCAGCTTAGGAAGCCTTCTTCACCTTCTTCTTGACAACAACAACTTTACAGGAGATCTTCCCTCTGAGCTCTCTCAGATGCCAAGCTTAAAGATTCTTCAACTTGATAACAACAACTTTGGTGGAAATAGCATTCCAAGCTCTTATGCAAACATGTCAAAATTGATAAAACTGAGTCTTAGGAACTGCAACTTGCAAGGACCAATCCCTGATTTGAGCACGATACCACGCCTTACGTATCTTGACCTCAGTTTGAATCAGCTGAATGAATCAATTCCAACTAATAAGCTTTCAGACAATATCACAACCCTTGATTTATCAAACAATAATCTTATTGGAACTATTCCATCCTACTTTTCTGATCTTCCACGTCTTCAAAAGCTGTCAATTGCAAACAATTTACTGAACGGAAGTGTTCCTTCTACCATTTGGCAGGACAGGACTTTAAATGGATCAGAAATGCTTCGCTTGGACATGCAAAATAATCAACTTACAAGCATATCAGGAAGTACAAATCTTCCTCCAAATGTCACCCTCTGGCTTGAGGGAAATCCTATGTGCTCAAATAATAACACCTTAGCTCAGTTCTGTGGATCTAAAAGTGATAGTAGCGTCAATGGTAACTTCAGTGTTAGCTGTCCCACCCAAGCATGCCCCCCTCCCTATGAATATACTGTGGACTGTTTCTGTGCTGCCCCCTTGGTTGTTAACTATCGATTAAAAAGTCCAGGATTTTCAGATTTCCGCACTTACATGAATGCATTTCAGAGCATGATGTCAAGGGGTCTTAAAATACGTATTGATCAGTTCTATATTCAAAAATTTGAATGGGAAGAAGGTCCTCGTTTGGGAATGCACTTGAAGCTTTTTCCTTTGTATGTTGATAATAACAGCTCTCATGTTTTCAATACAAGTGAGGTTCTTCGGCTCAGAAACTCGTTCTTAGACTTTGATCTTCCAACCAATGATTTGTTCGGACCTTTTGAGCTTCTAGACTTCATTCTGCTGGATCCTTACAGGGATGTGATTGTTACCTCTCCAAGTTCAGGGATCAGCAAAGGAGCACTGGCTGGAATAGTCTTGGGTGCAATTGCCTTTGTAGTTACTTTTTCTGCAATTGTTACTATTCTCGTTCTGAGAATACGTTTGAGAGATCATCCTACACCTTCCAAACGGGCAAAAGCATCTAGGATCCCAATAAAAATTGAAGGTATAAGATCATTTAACTACGAAGACATGGCTGGCGCTACGAACAATTTTAGTGACTCAGCTCGAATTGGACAAGGTGGGTATGGGAGGGTTTTCAAAGGTCTTCTTCCTGATGGCACTGTTGTTGCCATAAAGCGTGCACAGGAGGGTTCCCTGCAGGGTGAGAAGGAGTTTCTTACAGAAATAGAATTGCTATCAAGGCTACATCACCGCAACCTTGTCTCTCTGATTGGATACTGCGATGAAAAGGGTGAACAGATTTTGGTTTATGAGTACATGCCAAACGGAACGCTAAAGGATCACCTCTCGATTTATTCAGAAAAACCTCTTAGTTTTTCAATGAGGTTGAAGATTGCTCTAGGATCAGCTAAAGGTCTTCTGTATCTACACACGGAAGTAGATCCTCCAATATTCCACCGAGATGTCAAGGCCACCAATATATTATTGGACTCCAAGTTCACTGCGAAAGTTGCTGACTTCGGACTTTCACGACTTGCCCCTGTCCAAGATACAGAAGGAAACGTGCCTGGTCACGTATCTACTGTTGTAATGGGGACTCCGGGTTATATCGATCCAGAGTACTTCTTAACTCACAAATTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTAGAACTTGTGACTGGGAGGCCAGCAATCTTTCATGGCGAAAATATTATTAGACAGGTTATTATGGCATACGAATCTGGTGGATTGTTTTCAGTTATTGATAAACGGATTGGGTCTTATCCTTCAGAATACGTGGAGAAGTTTGTGACGTTGGCCTTAAAGTGTTGCAAAGATGCACCAGACGAGCGACCTAAAATGGCAGAAGTGGTTAGAGAGATCGAAAACATGTGTTCAATGTTACCAGAGACGAACGATGTGGAAGCAGAGCATGGGAGAAGTGGTTATGGAAGAATAATATCCAGTTCACAACCTTCATCATCGACTAGCAGGACTCCTTTTGTTTCAGAAGATGTGTCTGGTAGTGACCTTGTCAGTGGAAAGATACCCACCATTAGGCCTAGATAA 2844 0.4072 MYLWKGCKFEEVVLLSLCLYCYFLFATALITDPTEVEALRIIKVSLIDINGNLSNWDGGDPCTSNWTGVMCSDTTLVDGYLHVKQLHLLNMNLSGNLAPEIGRLSYLEVLDFMWNDITGSIPKEIGFINPLKLLLLNGNQLTGELPEELGFLPFLIRLQIDQNNITGPIPLSFAKLNTTVHFHMNNNSLSGQIPPQLSSLGSLLHLLLDNNNFTGDLPSELSQMPSLKILQLDNNNFGGNSIPSSYANMSKLIKLSLRNCNLQGPIPDLSTIPRLTYLDLSLNQLNESIPTNKLSDNITTLDLSNNNLIGTIPSYFSDLPRLQKLSIANNLLNGSVPSTIWQDRTLNGSEMLRLDMQNNQLTSISGSTNLPPNVTLWLEGNPMCSNNNTLAQFCGSKSDSSVNGNFSVSCPTQACPPPYEYTVDCFCAAPLVVNYRLKSPGFSDFRTYMNAFQSMMSRGLKIRIDQFYIQKFEWEEGPRLGMHLKLFPLYVDNNSSHVFNTSEVLRLRNSFLDFDLPTNDLFGPFELLDFILLDPYRDVIVTSPSSGISKGALAGIVLGAIAFVVTFSAIVTILVLRIRLRDHPTPSKRAKASRIPIKIEGIRSFNYEDMAGATNNFSDSARIGQGGYGRVFKGLLPDGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLIGYCDEKGEQILVYEYMPNGTLKDHLSIYSEKPLSFSMRLKIALGSAKGLLYLHTEVDPPIFHRDVKATNILLDSKFTAKVADFGLSRLAPVQDTEGNVPGHVSTVVMGTPGYIDPEYFLTHKLTDKSDVYSLGVVFLELVTGRPAIFHGENIIRQVIMAYESGGLFSVIDKRIGSYPSEYVEKFVTLALKCCKDAPDERPKMAEVVREIENMCSMLPETNDVEAEHGRSGYGRIISSSQPSSSTSRTPFVSEDVSGSDLVSGKIPTIRPR* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0809 947 SUPERFAMILY L domain-like 47 398 - -
Vra6g0809 947 Pfam Protein kinase domain 618 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0809 947 ProSitePatterns Protein kinases ATP-binding region signature. 623 645 IPR017441 GO:0005524
Vra6g0809 947 MobiDBLite consensus disorder prediction 909 931 - -
Vra6g0809 947 Gene3D Ribonuclease Inhibitor 296 400 IPR032675 -
Vra6g0809 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Vra6g0809 947 ProSiteProfiles Protein kinase domain profile. 617 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0809 947 SUPERFAMILY Protein kinase-like (PK-like) 602 900 IPR011009 -
Vra6g0809 947 MobiDBLite consensus disorder prediction 908 947 - -
Vra6g0809 947 CDD STKc_IRAK 623 889 - -
Vra6g0809 947 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Vra6g0809 947 SMART serkin_6 617 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0809 947 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 13 921 - -
Vra6g0809 947 ProSiteProfiles Leucine-rich repeat profile. 351 371 IPR001611 GO:0005515
Vra6g0809 947 Gene3D Phosphorylase Kinase; domain 1 588 692 - -
Vra6g0809 947 Gene3D Ribonuclease Inhibitor 31 295 IPR032675 -
Vra6g0809 947 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 921 - -
Vra6g0809 947 Gene3D Transferase(Phosphotransferase) domain 1 693 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0809 Vra-Chr6 7938561 7947902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0809 9 895 Receptor kinase-like Gene Family AT5G01950 54.444 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vra6g0809 Pkinase 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0809 - - var:108337551 1704.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0809 6 7938561 7947902 Vra6g0809 6 7938561 7947902 ECH