Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0807 ATGGCAAAGGGTGGTACAATCAACACTTACGAAGAGGCCAGAAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAAGATTTCAAAAAATTTGACTGAGATCACAAGTTCTGCAAAGAAGTCAGGGCATCATGTTCATAAACTGAAATCAAAGAAGTCAAATGGGGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGGAACCCAGTTCCTTCATACAGGGAAGATGTGAGTATACACTTTCCAGCTTTGCGGAAGAGATCAATATCTTCAACACGGGGAAGTTACACTGCGAGGCCTTTAGATGAAATCAAAGAAGCTACAGAAGAGGAAAGACTTTATGCTCTGGAGGCTGCAGAGGCACTCCAAATCAATTTGAACTCTTCAAATCCCTCATTTATCAAGTCGATGCTTTGGTCTCACGTTTATAAGGGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATTTTCCAAAAACTGTGTGTGACATGGTTTTAGAAGATGAAAACGGCTCAGAATACAAGGCTGTTTACATAGGCAACAAAAGTGGACTTAGCGGTGGTTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGATTGAACCATCGAGATTTAAGATGGCAAAGCGTCGCACAAACAACACTTACGAAGATGCTAGAAAACAGAGACTTGAAGAAAATAAAAAGAGGTTTGAGGATTTGGGAATTTTAAGGATTTCAAAAAATCTGACCGAGATCACAAGTTCCGCAAAGAAGACACGGCATCATGTTCCTAAACTAAAATCAAAGAAATCAAATACTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGGAACCCAGTTCCTTCTTACAGGGAAGATGTGAGTGAATACCTTCCATCTTTGAGGAAGAGGTCAAGATCAAATTCTTCAACATGGGGAAGTTACATTGCGAGGCCTTTAGATGAAATCAAAGAAGCCTCAAAAGAGGAAAGACTTTGTGCTCTGGAGGCTGCAGAAGAACTCCAAATCAATTTGAACTCTTCAAATCCCTCATTTATCAAGTCAATGGTTCGGTCTCACGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTCTAAGTTTTGTGAGGAACATCTTCCAAAAACTGTACATGACATAGTTTTAGAAGATGAAAATGGTTCAGAATACCAGACTGTTTACATAGGCAACAGAGCTGGATTAAGCGGAGGCTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGATTGAACCATCGAGATTTAAGATTTATATTGTTAGAGCTTTTCCAAGTTTAGTTGAAGAAAAGGGAAATGATATTTTAGTTGAAGAAGGAAATAAGCATGCAACCAAAGTACCGAAAACTAAATGTAATCTTGAGTCAGAATCCAAGACTAAAAATAAAAAGCCAAGACAGGAAAAATATGAAACTAGTGAATCAGAGAGTTCTCAGGAGCATATTGACAAAGAAGTCAAGCCACAGGGTGCAAATCCATTGAAGCAAACTAAAATCTCTAAGAAAAAAACGCAAAAGAAATCAATACTTTTGGCTACTACAGATTCGAAAGGGAAAGTGCAATTGAAAACTGAAGAACCAATGTTGTCTCTAGTGCTGTCAAAGAAGACAAGGAAGTCAAAGGGTATCAATGGAATTGATGACTCAGGCAAGTTAGAGAAGAAAATTTGTGTTCATGATGCTGATAGCAAGTTGGAAAAGGTTGAAGAAGCAAGCAAATGTGTGGTACAGACAGCTAGAAAAAAATCAGCTCCAAAGTATTTCAGAAAGAAAGCATAA 1866 0.3885 MAKGGTINTYEEARKQRLEENKKRFEDLGISKISKNLTEITSSAKKSGHHVHKLKSKKSNGEVEPRRSSRVRNPVPSYREDVSIHFPALRKRSISSTRGSYTARPLDEIKEATEEERLYALEAAEALQINLNSSNPSFIKSMLWSHVYKGFWLGLPSKFCEEHFPKTVCDMVLEDENGSEYKAVYIGNKSGLSGGWRAFALDHKLDDGDALVFELIEPSRFKMAKRRTNNTYEDARKQRLEENKKRFEDLGILRISKNLTEITSSAKKTRHHVPKLKSKKSNTEVEPRRSSRVRNPVPSYREDVSEYLPSLRKRSRSNSSTWGSYIARPLDEIKEASKEERLCALEAAEELQINLNSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTVHDIVLEDENGSEYQTVYIGNRAGLSGGWRAFALDHKLDDGDALVFELIEPSRFKIYIVRAFPSLVEEKGNDILVEEGNKHATKVPKTKCNLESESKTKNKKPRQEKYETSESESSQEHIDKEVKPQGANPLKQTKISKKKTQKKSILLATTDSKGKVQLKTEEPMLSLVLSKKTRKSKGINGIDDSGKLEKKICVHDADSKLEKVEEASKCVVQTARKKSAPKYFRKKA* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0807 621 ProSiteProfiles B3 DNA-binding domain profile. 138 229 IPR003340 GO:0003677
Vra6g0807 621 Pfam B3 DNA binding domain 138 223 IPR003340 GO:0003677
Vra6g0807 621 Pfam B3 DNA binding domain 362 450 IPR003340 GO:0003677
Vra6g0807 621 MobiDBLite consensus disorder prediction 475 531 - -
Vra6g0807 621 Coils Coil 8 28 - -
Vra6g0807 621 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 225 461 IPR044837 -
Vra6g0807 621 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 223 IPR044837 -
Vra6g0807 621 SUPERFAMILY DNA-binding pseudobarrel domain 357 451 IPR015300 -
Vra6g0807 621 ProSiteProfiles B3 DNA-binding domain profile. 362 453 IPR003340 GO:0003677
Vra6g0807 621 MobiDBLite consensus disorder prediction 475 517 - -
Vra6g0807 621 CDD B3_DNA 360 451 IPR003340 GO:0003677
Vra6g0807 621 CDD B3_DNA 136 223 IPR003340 GO:0003677
Vra6g0807 621 MobiDBLite consensus disorder prediction 263 296 - -
Vra6g0807 621 SMART B3_2 362 453 IPR003340 GO:0003677
Vra6g0807 621 SMART B3_2 138 229 IPR003340 GO:0003677
Vra6g0807 621 Gene3D - 337 453 IPR015300 -
Vra6g0807 621 Gene3D - 112 227 IPR015300 -
Vra6g0807 621 Coils Coil 225 245 - -
Vra6g0807 621 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 225 461 - -
Vra6g0807 621 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 5 223 - -
Vra6g0807 621 SUPERFAMILY DNA-binding pseudobarrel domain 133 228 IPR015300 -
Vra6g0807 621 MobiDBLite consensus disorder prediction 41 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0807 Vra-Chr6 7911113 7923558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0807 232 452 B3 DNA Binding Superfamily AT5G58280 53.571 5.42e-71 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra6g0807 B3 2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0807 - - vra:106764146 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0807 6 7911113 7923558 Vra6g0807 6 7911113 7923558 ECH