Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0802 ATGCTTGCTGCTGCTGCTTCAGCTTCTCGGCACCTTCTTCAACGCGATGCCAGCATCGGTGCTTGCAGTGGCAGTGGCAATCGAGTTCGCTCTCTTTTTACAGTTTCTGTGATCGCCACAACCTACCCAAGTCGCACTAAAACATGTTACAGTCATGGTTATGGAATCAGTTTCAATACCCCAAAACACAGAGCGTGCCCAGGTTTGCTTTTTGCTGTAAAGGGGTTCCTCTCTGATTCATCAAATTCTAATTCTCCACATGGCAGAGTTTCCAGACCTCACTTACCACATCCTAGTTCAAGTGTGGATGGGCGAGCATTGTTCTCAACTTCAGCTAAAGATGATGGGAGGCAAAGCCAAAAGGCTGCTTCTTCCACCATTCCTAAACCATCACCATCACTTCCTAATGGGCAAGTTGCTGATGTGAGGATCCTTCGCACACTTGCCAGTTACCTTTGGATGAAAGATAATCTTGAATTCCGGGTTCGGGTTATTGCCGCATTGGGCTTACTTATTGGGGCCAAGGTTTTGAATGTTCAGGTCCCGTTCTTGTTCAAGCTTGCAGTTGATTCGTTGACGACTGCTTCGGGGAATGCTGCTGCTCTTGCTTCGAGTTCAAGTGGGTTGGCTCTTTTTGCAACCCCAGTGGCAGTGTTGGTTGGATATGGGATTGCGCGTTCAGGAGCTTCTGCTTTCAACGAATTGCGGACTGCTATATTTTCTAAGGTTGCACTGCGAACAATTCGATTAGTATCAAGAAAGGTCTTCTCACATTTGCATGACCTTGACCTTCGGTATCATCTAAGCCGAGAAACGGGTGCATTAAGTAGAATAATTGATCGCGGTAGTCGTGGAATAAATTTCATTCTCTACTCTATGGTGTTCAATGTGGTACCTACCATGATAGAGATATCTATGGTAGCAGGTATACTGGCCTACAAATTTGGAGCTCCCTTTGCGCTTATTACTTCCTTATCAGTTGCTGCTTATGTTATTTTCACTCTGTCTATCACACAGTGGAGGACTAAGTTCAGGAAAGCCATGAATAGGGCTGATAATGATGCTAGTACGAGGGTTATTGATTCACTTATTAATTATGAGACTGTCAAATATTTTAATAATGAAGTTTATGAAGCTGATAATTATGACAAGTACCTAAAGAGATATGAAGATGCTGCTCTGAAAACCCAACGAAGTCTTGCTGTCTTGAATTTTGGTCAAAATATTATATTTAGTACTGCCCTTTCATCAGCAATGGTGCTATGCTCTCATGGGATCATGGATGGAACGCTGACTGTTGGTGATTTGGTAATGGTGAATGGGCTTCTCTTCCAATTATCTCTTCCACTTAATTTCCTTGGTAGTGTTTATCGTGAGACTATACAGAGTTTAGTTGACATGAAATCCATGTTTCAGTTACTCGAGGAAAGAGCAGACGTTAGGGATAAAGAGAATGCACAGCCTCTTAGATACAATGGGGGGAGTATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCGTTTGTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTCTTTGATCCTAATTCTGGAAGTATAAAGATAGATAATCAAGATATTCGGGAGGTAACCCTTGAGAGTTTGCGGAAGTCCATTGGTGTTGTTCCACAAGATACTGTACTTTTTAATGATACTATATTTCACAACATTCACTATGGTCGGCTTTCTGCAACAAAAGAGGAGGTCTATGAAGCTGCTCAACAAGCAGCAATTCATAACACTATCATGAATTTTCCTGATAAATACTCAACTGTTGTTGGAGAGCGAGGGCTCAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCTTGGCTCGTTCATTCTTAAAAGCGCCTGCAATTCTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAAATTTTAACTGCATTAAAGTCCGTAGCAAAAAATCGAACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGATGAGATTATTGTTCTGGAAAATGGGAAGGTGGTTGAGCAAGGACCACATGAAGAGCTCTTATCAAAAGCAGGAAGATATGCACAACTGTGGGGACAACAAAATAACTCAATTGATGCAATTGATACAGCCATTGATGTGGGAGCATAA 2241 0.4203 MLAAAASASRHLLQRDASIGACSGSGNRVRSLFTVSVIATTYPSRTKTCYSHGYGISFNTPKHRACPGLLFAVKGFLSDSSNSNSPHGRVSRPHLPHPSSSVDGRALFSTSAKDDGRQSQKAASSTIPKPSPSLPNGQVADVRILRTLASYLWMKDNLEFRVRVIAALGLLIGAKVLNVQVPFLFKLAVDSLTTASGNAAALASSSSGLALFATPVAVLVGYGIARSGASAFNELRTAIFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRGINFILYSMVFNVVPTMIEISMVAGILAYKFGAPFALITSLSVAAYVIFTLSITQWRTKFRKAMNRADNDASTRVIDSLINYETVKYFNNEVYEADNYDKYLKRYEDAALKTQRSLAVLNFGQNIIFSTALSSAMVLCSHGIMDGTLTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERADVRDKENAQPLRYNGGSIQFENVHFSYLTERKILDGISFVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPNSGSIKIDNQDIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEAAQQAAIHNTIMNFPDKYSTVVGERGLKLSGGEKQRVALARSFLKAPAILLCDEATSALDSTTEAEILTALKSVAKNRTSIFIAHRLTTAMQCDEIIVLENGKVVEQGPHEELLSKAGRYAQLWGQQNNSIDAIDTAIDVGA* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0802 746 MobiDBLite consensus disorder prediction 103 133 - -
Vra6g0802 746 ProSitePatterns ABC transporters family signature. 633 647 IPR017871 GO:0005524
Vra6g0802 746 Pfam ABC transporter 512 661 IPR003439 GO:0005524
Vra6g0802 746 Pfam ABC transporter transmembrane region 165 449 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra6g0802 746 CDD ABCC_ATM1_transporter 496 731 - -
Vra6g0802 746 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 165 462 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra6g0802 746 MobiDBLite consensus disorder prediction 82 134 - -
Vra6g0802 746 Gene3D - 487 742 IPR027417 -
Vra6g0802 746 SMART AAA_5 521 707 IPR003593 -
Vra6g0802 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 731 IPR027417 -
Vra6g0802 746 CDD ABC_6TM_ATM1_ABCB7 167 470 - -
Vra6g0802 746 Gene3D ABC transporter type 1, transmembrane domain 151 486 IPR036640 GO:0005524|GO:0016021
Vra6g0802 746 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 101 737 IPR039421 -
Vra6g0802 746 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 496 730 IPR003439 GO:0005524
Vra6g0802 746 PANTHER ABC TRANSPORTER OF THE MITOCHONDRION 1-RELATED 101 737 - -
Vra6g0802 746 SUPERFAMILY ABC transporter transmembrane region 159 475 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0802 Vra-Chr6 7840218 7858425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0802 332 732 Calmodulin-binding Proteins AT2G36910 36.893 3.30e-66 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0802 K05662 - gmx:100779975 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0802 6 7840218 7858425 Vra6g0802 6 7840218 7858425 ECH