Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0785 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAAAAGAAGTGTTTGAATTCAGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGAACTCGTGTGGTCTATTTCCCTCAAGGTCATAGCGAGCAGGTTGCTGCCACAACTAACCGAGAAGTGGATGGGCACATACCCAATTACCCCAGTTTGCCGCCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGTTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCATTCCAAGTAAGCAGCCTTCAAATTATTTTTGCAAGACATTAACGGCAAGTGACACCAGCACGCATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCACCTGCGCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTCCGACACATTTTTCGGGGACAGCCGAAACGACACCTTCTTACAACTGGCTGGAGTGTATTTGTCAGTGCCAAAAGACTAGTGGCTGGGGATTCTGTGCTTTTTATATGGAACGAAAAGAATCAGCTTCTTTTGGGAATACGAAGAGCCAATAGACCGCAAACGGTCATGCCATCCTCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGCTTTACAGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATACATTAAAGCTGTGTACCACACACGAGTGTCTGTTGGTATGCGTTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTACGCAGGTATATGGGTACTATAACTGGCATAAGTGACCTGGATCCTGTTCGGTGGCCGAATTCTCATTGGCGGTCTGTTAAGGTTGGCTGGGATGAATCAACAGCAGGAGAGAGACAGCCAAGAGTATCATTGTGGGAAATTGAGCCTTTAACAACATTTCCAATGTATCCATCACTGTTTCCTCTTAGATTGAAACGGCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCGACGAATGGGCTAATGTGGCTGAGGGGTGGACCTGGAGACCAAGGTCTCAATTCCCCGAGTTTTCAAGGGTCTGGTTTGTTGCCATGGATGCAGCAGAGAATGGATCCAACTTTGCTTGGAATTGATCATAATCAGCAGTACCAAGCCATGTTTGCATCTGGTTTGCAGAACTTAGGGAGTGGAGATCTGATGAGACAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTTCTTTGCAGCTTCAGCAACCACAAGCAATTCAGCAATCCGTAACTTCTAATAATATCCTACAGCCGCAAGCCCAAGTATTGGCAGAGAACCTGTCGCAGCATCTCCTTCAGAAATCACACAATCGCGAAGACCAAACACAGCAGCAGCAGCAGCAACAGCACACTTATCAAGATACTGTTTTACTTCAAAGTGATCAGCTGCATCAAAGGCAACACTCTGGTTTACCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCCCTGCTACTGTTTCTCCAGGACAAAATATGCTGAGTTCACTTTGTCCTGAAGGGAGTGGCAGTCTCTTGAATTTATCCAGAAGTGGTCAGTCAATGCTGACTGATCAACAGTTACCCCAACAACCATGGGCCCCAAAGTTTACACCTTTGCAGGTCAATACTTTTGGCAACTCAATGCCCCATGTTCAATATTCTGGAAAAGATACCGCAATGGTGTCACCACACTGTAACTCAGACACCCAAAATCCTATTCTATTTGGTGTCAACATCGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACCACCGCATCAGCTGATACTGATGCATCAGCAATGCCATTAGTGGAGTCTGGATTCCAAACTCCTCTATACCCTTGCGTCCAAGATTCATCAGAGTTGTTGCGAAGTGCAGGGCAAGTTGACCCTCAAAACCAGACACGAACATTTGTCAAGGTTTACAAGTCAGGGTCGGTAGGGCGGTCACTTGACATCTCCCGGTTCAGCAGTTACCATGAGCTGAGGGAGGAGTTGGCACAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTGAATAATGTTTGGTACATCAAAATACTTTCACCTGAAGATATCCAGAAAATGGGAGAACAAGCCGTAGAATCCCTTGGTCCAAGTTCAGGACAGAGGCTGAATAGCACTGGTGCAGATTCCCATGAAATTGTTTCTGGACTTCCATCAATAGGCTCCCTTGAATACTGA 2544 0.4603 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGPGDQGLNSPSFQGSGLLPWMQQRMDPTLLGIDHNQQYQAMFASGLQNLGSGDLMRQQMMNFQQPFNYLQQSGNPNPSLQLQQPQAIQQSVTSNNILQPQAQVLAENLSQHLLQKSHNREDQTQQQQQQQHTYQDTVLLQSDQLHQRQHSGLPSPSYSKPDFLDSSMKFPATVSPGQNMLSSLCPEGSGSLLNLSRSGQSMLTDQQLPQQPWAPKFTPLQVNTFGNSMPHVQYSGKDTAMVSPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTASADTDASAMPLVESGFQTPLYPCVQDSSELLRSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSTGADSHEIVSGLPSIGSLEY* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0785 847 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 832 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra6g0785 847 PANTHER AUXIN RESPONSE FACTOR 1 832 - -
Vra6g0785 847 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra6g0785 847 Gene3D - 717 810 - -
Vra6g0785 847 Pfam AUX/IAA family 718 805 IPR033389 -
Vra6g0785 847 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Vra6g0785 847 SMART B3_2 128 230 IPR003340 GO:0003677
Vra6g0785 847 ProSiteProfiles PB1 domain profile. 721 805 IPR000270 GO:0005515
Vra6g0785 847 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vra6g0785 847 MobiDBLite consensus disorder prediction 545 564 - -
Vra6g0785 847 Gene3D - 292 364 - -
Vra6g0785 847 MobiDBLite consensus disorder prediction 545 562 - -
Vra6g0785 847 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vra6g0785 847 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Vra6g0785 847 SUPERFAMILY CAD & PB1 domains 719 795 - -
Vra6g0785 847 MobiDBLite consensus disorder prediction 814 833 - -
Vra6g0785 847 Gene3D - 126 229 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0785 Vra-Chr6 7661941 7673634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0785 98 818 B3 DNA Binding Superfamily AT5G37020 68.493 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra6g0785 AUX_IAA 1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0785 - - gmx:100780393 1611.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0785 6 7661941 7673634 Vra6g0785 6 7661941 7673634 ECH
Vra10g0486 10 10705527 10712528 Vra6g0785 6 7661941 7673634 PCT