Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0775 ATGGAGCAGGAACAACAAAACCTTGAAAGCTTCTTAACATGGGCAGCACAACTTGGAATATCAGACTCATCAGCACCCACCAATCAACCTCAATACTGTCTTTCCTCATGTTTGGGTTCTTCTTTATGTGTCGCTCATTTTCCTCACTCTGGCGGGAGAGGTTTGGGTGCTGTGAGAGACCTTAAGAAGGGGGAAATCGTTCTCAGAGTTCCAAAATCTGCTTTAATGACAAGAGAGAGTGTTATGGAAGATGAAAAGCTCTGTTTTGTTGTCAGTAGACACTCTTGTCTCTCCTCAGCTCAGGTATTGATCGTTTGCTTGTTGTATGAAATGGGTAAAGGGAAGACTTCAAGATGGCATCCTTACCTCATGCATTTGCCACACACATATGACATACTAGCGATGTTTGGTGAATTTGAGAAGCGTGCTCTGCAAGTGGATGAAGCTGTGTGGGTCACCGAAAAAGCTATACTGAAGGCCAAATCGGAGTGGAAAGAAGCTCTTGCTTTGATGGAAGATCTCATGTTTAGGCCCCAGTTTTTGACATTAAAGGCTTGGCTTTGGGCTGCTGCAACGATATCTTCTCGAACATTGCATATACCATGGGATGAAGCCGGATGTTTATGTCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAGAGGAGTCATCTGACATTGAGGGTTTAGAACATTTTCCATCAAACTCTTCCATTCACGATCCAAACTTATTAAATGGAGGCAAGAATATAATGGTAGATGCAGAACAGTTTGATTCTCATTCTCAAAGATTAACTGATGGTGGGTTTGAGGAAGATGTTAATGCATATTGCTTCTATGCTAGAGCACATTACAAGAAAGGCGATCAGGTTCTATTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTACGGCTTTCTCCTGCAAGAAAATCCAAATGACAAGGTTTTTATCCCTTTGGAACCAGCTATATATTTTTCCACTTCATGGTCTATGGAATCACTCTATATCCATCATAATGGGAAGCCTTCATTTGCACTACTTGCTGCATTGCGGTTGTGGGCAACCCCTCAAAACAAAAGGAAGTCTGTCGGACATCTTGTGTATTCTGGTTCCCAACTGTCAGCAGACAATGAAATTTTCATCACGAAATGGCTGTCCAAAACTTGTGCGACTGTGTTAAAGAATCTGCCGACATCTATTGATGAAGACACCTTGCTCTTGAATGCAATGCACAGTAGCCAAGATTTTTTCACTTTCATGGAGATCACAAAACCTATGTCTTCCAGGGATGAGATCTATGCCTTCTTAGATGCACATGATATGAAAGGTGCACATAGTTTCACTGGCGTAATATTATCTAGAAAAGCAAGAAGGTCCATGGAAAGGTGGAAATTAGCTGTCCAATGGAGACTGAAGTATAAGAAAGTCCTTTCTGATTGTATCACTTATTGCAATGAAATACTAGATTCTTTCATAAAATAA 1494 0.4103 MEQEQQNLESFLTWAAQLGISDSSAPTNQPQYCLSSCLGSSLCVAHFPHSGGRGLGAVRDLKKGEIVLRVPKSALMTRESVMEDEKLCFVVSRHSCLSSAQVLIVCLLYEMGKGKTSRWHPYLMHLPHTYDILAMFGEFEKRALQVDEAVWVTEKAILKAKSEWKEALALMEDLMFRPQFLTLKAWLWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEESSDIEGLEHFPSNSSIHDPNLLNGGKNIMVDAEQFDSHSQRLTDGGFEEDVNAYCFYARAHYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKVFIPLEPAIYFSTSWSMESLYIHHNGKPSFALLAALRLWATPQNKRKSVGHLVYSGSQLSADNEIFITKWLSKTCATVLKNLPTSIDEDTLLLNAMHSSQDFFTFMEITKPMSSRDEIYAFLDAHDMKGAHSFTGVILSRKARRSMERWKLAVQWRLKYKKVLSDCITYCNEILDSFIK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0775 497 CDD SET_LSMT 41 310 - -
Vra6g0775 497 Pfam SET domain 52 296 IPR001214 GO:0005515
Vra6g0775 497 Gene3D - 330 495 IPR036464 -
Vra6g0775 497 PANTHER PROTEIN SET DOMAIN GROUP 40 4 482 - -
Vra6g0775 497 ProSiteProfiles SET domain profile. 40 296 IPR001214 GO:0005515
Vra6g0775 497 Pfam Rubisco LSMT substrate-binding 345 481 IPR015353 -
Vra6g0775 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 482 - -
Vra6g0775 497 SUPERFAMILY SET domain 7 314 IPR046341 -
Vra6g0775 497 Gene3D set domain protein methyltransferase, domain 1 4 310 - -
Vra6g0775 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 306 491 IPR036464 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0775 52 332 NAC Transcription Factor Family AT3G56570 23.442 2.96e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra6g0775 SET 3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0775 - - gmx:100787452 850.506