Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0770 ATGGCACCTGTTTTGCCTCCTGGTTTTAGGTTCCATCCTACTGACGAAGAACTCGTTGCTTATTACCTTAAAAGGAAGATCAATGGTCGAAAGATTGAGTTGGAAATCATTCCAGAAGTTGATCTCTACAAGTGTGAACCATGGGACTTACCAGGGAAATCATTGTTACCGGGGAAGGATTTGGAGTGGTATTTCTTTAGCCCTCGTGACAGAAAATACCCAAATGGATCAAGAACAAACCGAGCAACAAAATCTGGGTATTGGAAAGCAACAGGGAAGGATAGAAAGGTAAATTCGAAGGCTCGTTCTGTGGGTATGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCCCATGGCTCTCGCACAAATTGGGTTATGCATGAATATCGTCTTGATGAGACAGAATGCGAAACTGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTGAAGAAGACTGCAGTGATTCCTCAAAAAGTTGAGGGGCACTATGTTAATGTTCCCAATGTCAATCAGATTACAAGCGATCAATCATCGAGCATTGAACTATACTCTGAAGGAAGGGGCGAAGATTTAGTAGATAGCTCAAATTATTTTATGTCTGTGGATACTTGTTCACCACACAATGTTGGAACTGAGACTCCTCTTACTATAAGTGGTGTAACGACAATGGATCATGAAAAATGGTCACACTTTTCATCACAAGATTCAATGTTTAGTCTTCCAACTTCTTCATATCCTAATTTTGGAGCCATAGCATACCCTCCATCCAAGGTGGATATAGCACTAGAGTGTGCAAGGATGCAACATAGGTTTGTTATGCCCCCTTTGGAGGTGGATGACTTCCCTCAAGTTGGGATCTCTGAGCTGAAAATGACACAAGCTTCTAGTTCCATGCAAGGAAGCAGAACTGAAACAGATATCTTACAGGAAATTCTTTCAGTGGCTCAGGCCTCTCAGGAATTAATAAATCAATCCAACTACTCACAGGAATGGTGTGGCAATGATTATTATGCTCCTCGTGATGAGGATTTTGCCTTCATGGTTGGCACTAATTACAATCATTCAAGTGAAATAATGAACTCAGTGAGGTATGTTGACAAAGCATGGGAAGATGCAAACACAAGGACAATAGAGATCGGAGATATGGATGAAGAATTTAAGGTGGAGAGGAATGTAGAGAATTTAAGATGGGTCGGAATGTCAAAAGAAGATTTAGAAAAGATGGAAGAACAAAATATTGTCCCAATAGAGGATATTTCAAGCTTCCAAACTAAGATGAAAGAAAATGAGGTGCAAGAATCTGAGCAACACAGTAACATGGAACATAATGGTACTGAAATAAATGATTTCTCATTGGGTTTCATCAATGATGACGACCCTACAGAGAACTTGACAGAAGATGGTAACAAGGATGATTATTCAAGTTCTCCTAGTTTTGAGGTTGTCGAGGAAATAAAGGTTAATCGTGGAATGTTGGTTTCGACTCGTCAAGTGGCAGAGACATTCTTTCAGCAAATGGTTCCTTCACAAACAGTCCAAGTTCAGCTTAATACAGTGATGGCACACAATCATTACGTAGAGAATGCAGAAGCAATGGTGTTGATAATGGAGGAACAAGGGTCTTTAAGGAAGGTTAAGGCCTATGTGATGGGGAAGCTAATAAAGTCATCAATGACAATAGCAAGTGCGATTGTATTCGTCTTTGCACTTGTGATTATGCATTATGCTTTTATAAAGGGAGAAGTGAAATTTTGGAATGAGACATATTGCAGTAATTGTGATAAGATCATGAAGAAAACGAATCGATCATGTCAGATAATGAATGAGTCAAATGATGTTTGGTTTATTGGTATCAAAAGTGGAAAAGGTTTAAATGCAGTGTTGAAGAAAATAGGAATTTTTCTCACTATATTCTTCGTTCTTTGTGCCATGTGGGCTAACCATAGTTGA 1962 0.3955 MAPVLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSKARSVGMKKTLVYYRGRAPHGSRTNWVMHEYRLDETECETASGLQDAYALCRVLKKTAVIPQKVEGHYVNVPNVNQITSDQSSSIELYSEGRGEDLVDSSNYFMSVDTCSPHNVGTETPLTISGVTTMDHEKWSHFSSQDSMFSLPTSSYPNFGAIAYPPSKVDIALECARMQHRFVMPPLEVDDFPQVGISELKMTQASSSMQGSRTETDILQEILSVAQASQELINQSNYSQEWCGNDYYAPRDEDFAFMVGTNYNHSSEIMNSVRYVDKAWEDANTRTIEIGDMDEEFKVERNVENLRWVGMSKEDLEKMEEQNIVPIEDISSFQTKMKENEVQESEQHSNMEHNGTEINDFSLGFINDDDPTENLTEDGNKDDYSSSPSFEVVEEIKVNRGMLVSTRQVAETFFQQMVPSQTVQVQLNTVMAHNHYVENAEAMVLIMEEQGSLRKVKAYVMGKLIKSSMTIASAIVFVFALVIMHYAFIKGEVKFWNETYCSNCDKIMKKTNRSCQIMNESNDVWFIGIKSGKGLNAVLKKIGIFLTIFFVLCAMWANHS* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0770 653 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 398 - -
Vra6g0770 653 Pfam No apical meristem (NAM) protein 6 132 IPR003441 GO:0003677|GO:0006355
Vra6g0770 653 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Vra6g0770 653 MobiDBLite consensus disorder prediction 436 480 - -
Vra6g0770 653 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 398 - -
Vra6g0770 653 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Vra6g0770 653 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0770 Vra-Chr6 7497835 7501747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0770 1 577 NAC Transcription Factor Family AT1G65910 47.432 1.36e-160 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra6g0770 NAM 4.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0770 - - vra:106763980 1329.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0770 6 7497835 7501747 Vra6g0770 6 7497835 7501747 ECH