Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0765 ATGGCGATACAAGGCAAAAGTGCATTTACTAGATCAAGGGGTGGTCCTCCAATTGGAGATGAAATATGTTTGAGTCCCGGTGTGCATTCTGTTGCAGATATTCCACTACATGATCAGTTTTCTTTTGGAAATGACTATGCCTTGAAGGTAAGAAAACCGTATACAATCACAAAGCAGAGGGAGAGGTGGACAGATGAAGAACACAAGAAGTTCCTTGAAGCCTTAAAGCTATATGGCAGAGCCTGGCGAAGGATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATTGTTAGAGAGTCTAGTGGGAACAGCACAACCTTGGAGGAATCAATTGAAATTCCACCTCCACGACCAAAAAGGAAGCCAATTCATCCTTACCCTCGTAAACTGATTGAGATTCCAAAGAAAGAGATTTCCAATTCAGAACATCCTCTGAGGTCTAATTCTCTCAAGTCATCAGATTTTGGTCAAGAAAACAATTCTCCTAAGTCAGTGTTATCTACTGTCGTTTCCGAAAACCTTGGTTCCTCCGATTCAGACACACCCACTGGAAGTTTGTCACCAGTCTCATCCATTAGCGGTGTCCTCACAAACAGATTTCCACTAGCTCAACCCAAAACATCATTTGAGGAAGAAGGGTCTCTACCAAGTTCACCTCATGATGAGCAACATCTCGTGAAACTGAAGCTTTTTCACAGAGAAACTGTTTCTACCAAAGATGATGCAGCTGAGGAATCATGTGGTCGTACTCTCAAACTTTTTGGGACCACTCTACTGGTAACAGATACAAGCAAACCCTTTTCTCTAATAACGGAGCCATTCAAACCAATACCTGCGGCTGCAACATATCTTATGCAACTTCAAAATGGGTGTTCGGATCTTGCAGAAGGTCCTATTGTTCCAAGGTGGAGTTTTTCCCATAACGCACTATCCGAGACCCTGCAAAAGGAGCTAAAAGGGAAACACCTATACTCTAATCTTGGAGACTTTGAACATAAAGAGGTTCAAAAGGAAGGATCATGGAGTGGTTCAAACAGTAGTTCAGTTAATGATGGAGAGAACACTGCAGCAAGTGAAACATCAGGTATATTTGAGCTAAGGGTGAGAGCTAAAACCTGTGGGAAAGGGTTTGTGCCATACAAAAGGTGCATGGCAGAGAGAGAAAACAAATACTCGTCAGTTTGTGACGAGGAGAGGGAAGAGCAACGTGTCAAGCTTTCCTTATAG 1263 0.4252 MAIQGKSAFTRSRGGPPIGDEICLSPGVHSVADIPLHDQFSFGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKIVRESSGNSTTLEESIEIPPPRPKRKPIHPYPRKLIEIPKKEISNSEHPLRSNSLKSSDFGQENNSPKSVLSTVVSENLGSSDSDTPTGSLSPVSSISGVLTNRFPLAQPKTSFEEEGSLPSSPHDEQHLVKLKLFHRETVSTKDDAAEESCGRTLKLFGTTLLVTDTSKPFSLITEPFKPIPAAATYLMQLQNGCSDLAEGPIVPRWSFSHNALSETLQKELKGKHLYSNLGDFEHKEVQKEGSWSGSNSSSVNDGENTAASETSGIFELRVRAKTCGKGFVPYKRCMAERENKYSSVCDEEREEQRVKLSL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0765 420 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Vra6g0765 420 MobiDBLite consensus disorder prediction 351 368 - -
Vra6g0765 420 SMART sant 59 107 IPR001005 -
Vra6g0765 420 MobiDBLite consensus disorder prediction 125 154 - -
Vra6g0765 420 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
Vra6g0765 420 MobiDBLite consensus disorder prediction 183 202 - -
Vra6g0765 420 Gene3D - 62 109 - -
Vra6g0765 420 MobiDBLite consensus disorder prediction 116 177 - -
Vra6g0765 420 PANTHER SWI/SNF COMPLEX-RELATED 38 407 - -
Vra6g0765 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Vra6g0765 420 MobiDBLite consensus disorder prediction 347 368 - -
Vra6g0765 420 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Vra6g0765 420 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Vra6g0765 420 PANTHER PROTEIN REVEILLE 7-RELATED 38 407 - -
Vra6g0765 420 CDD SANT 62 105 IPR001005 -
Vra6g0765 420 MobiDBLite consensus disorder prediction 155 177 - -
Vra6g0765 420 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0765 Vra-Chr6 7456375 7459850 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra6g0765 Myb_DNA-binding 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0765 - - gmx:778060 636.721