Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0753 ATGACCTTGGAGGGGATTTTCATTGAGCCTACTTCAACCACTGCTCCTGATCTTTCTCTTCACATAAGCCCCCCAAGCATCTCCTCTTCCTTAATTTCCAATACCAACAACATCGCCAATTATGAACCCCAACCTAGTTTCCTTTCAAGGACTGTGTCTCAAGCCCACACAGAACTCTCTCTTGGAAGAAATTTCACTTCAGCAAGGGAAACACCGCCACCAACACCAACTCCAACACCACACAACCCTTATTATCCAACCCAAACCCATTTCCATCATCTTCTCCACTCCAGCACCAGCAGCAGCACTACTACTAGTAGTAATATTCCAACAAGTCTTCCTACAAGTGCCAACACTCCCTTGAATCACATAAACTATGGAGTTTCATTGCTTGATGTATCATCATCCGACGGCTTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCGTTCCCTTTTGTGGCCATGGACCATGCTAGAGACAACAAGGATCCTCATACCAAGATGTGCTTATATCATCACATGCCTTCTTACCCCTCTCTCTCTTCCTCGTGTTCCTCTCTGTGCTCCACAACCGCCCCTTCTTCTTCACCTTCGCCTTACTTCGTGGATCCCATGTCCTTCTTGAACAACGCTTCCACCGTGGGGTGTAGGACAGCCACTGCCACAAGGTTTAATGGGTTTTCCGGCGATGCTTTCAAATCTCATCCATTGCACCAATATGGGGTAGGCTCTTCAGAAGCCTCTTCAGGGTTCATGAGATCAAGGTTTTTGTCTAAGCTTCCCAACAAGAGGAGCATGAGAGCACCCAGAATGAGGTGGACAAGCACCCTCCATGCTCGATTTGTCCATGCGGTTGAACTTCTCGGAGGGCATGAAAGAGCTACTCCAAAATCAGTTCTTGAGCTCATGGATGTGAAGGATCTAACATTAGCTCATGTGAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCATCTTCAGGCCATTCAGATGGGTCTGGAGAGGATGACTTATCTCCTATTGGCAGCACCGCCGATCGGGGCAGTCTCCGGCAATTTCCCAGCCACAGAGGGCGGCCGGATTGGGTGGCGCAACAAGACATGGACTACTCTTCCACCACCACTCTTTGGAGTAATTCTTCAAGTTGTGGAGAATCGCGACAAAGAACAACTTCTAACGACATAGATGGTCTCAGATCACCTATTCTCCAGTCACAAACAATATCAGGAGCTCATCAAATTCAGGAGTGTGATTCAACACAACAGAAGAACAACATGGGAGGTTCTAATTTGGAGTGCAAGAATCCAAGCTTGGAATTCACATTAGGAAGACCACATTGGGATGGCAAAGAGCAAGCGTAA 1389 0.4737 MTLEGIFIEPTSTTAPDLSLHISPPSISSSLISNTNNIANYEPQPSFLSRTVSQAHTELSLGRNFTSARETPPPTPTPTPHNPYYPTQTHFHHLLHSSTSSSTTTSSNIPTSLPTSANTPLNHINYGVSLLDVSSSDGLRPIKGIPVYHNRSFPFVAMDHARDNKDPHTKMCLYHHMPSYPSLSSSCSSLCSTTAPSSSPSPYFVDPMSFLNNASTVGCRTATATRFNGFSGDAFKSHPLHQYGVGSSEASSGFMRSRFLSKLPNKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGHSDGSGEDDLSPIGSTADRGSLRQFPSHRGRPDWVAQQDMDYSSTTTLWSNSSSCGESRQRTTSNDIDGLRSPILQSQTISGAHQIQECDSTQQKNNMGGSNLECKNPSLEFTLGRPHWDGKEQA* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0753 462 MobiDBLite consensus disorder prediction 430 462 - -
Vra6g0753 462 MobiDBLite consensus disorder prediction 430 445 - -
Vra6g0753 462 SUPERFAMILY Homeodomain-like 269 325 IPR009057 -
Vra6g0753 462 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 272 325 IPR006447 GO:0003677
Vra6g0753 462 MobiDBLite consensus disorder prediction 375 406 - -
Vra6g0753 462 Gene3D - 271 328 - -
Vra6g0753 462 MobiDBLite consensus disorder prediction 61 87 - -
Vra6g0753 462 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 462 - -
Vra6g0753 462 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 462 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vra6g0753 462 MobiDBLite consensus disorder prediction 329 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0753 Vra-Chr6 7280766 7286643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0753 1 459 G2-like Transcription Factor Family AT5G16560 39.250 1.39e-71 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra6g0753 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0753 - - gmx:100796325 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0753 6 7280766 7286643 Vra6g0753 6 7280766 7286643 ECH
Vra3g0916 3 9200923 9206207 Vra6g0753 6 7280766 7286643 PCT