Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0751 ATGAAACCAAACTTTGATCTTGAAGTTGAGGCACATGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTTTCTATTCAAGAAACCTCTATAGGTCCTTGTAGTGACAGCCTCACTAACATTTCCCACACCACAAATCCAATTGGGAGTCATCCTAATTCAGATGCTATTTCACTTGACTTAACTCTCAACTTCAAGAACAGTGAGCCAGGGGGAAGAGATTCAATAGGATTCTCATTCTCAAGCACTAGCGAGAGCAGCAATGAACCTGCTTCTCAAACCACAGCAGCGACCATATCACGAGTCTTCTCTTGCAATTACTGTAAGCGCAAATTTTTCAGCTCTCAGGCTCTTGGTGGACACCAGAATGCCCACAAGAGAGAAAGAACATTAGCAAAAAGGGCTTTAAGAATGGGATTTTTCTCTGAAAGGTATGCCAGTCTAGCATCTCTCCCTCTGCATGGTTCCTTTAGGTCCTTAGGAGTAAAGGCACACTCTTCACTGCACCATGGTTTCTCACCAACAATGAGGCCTCCTGAGATAAAAAGCAACGCAAGATTTGATCAAGGGTATGTTGGCATCCCAATATTCTTGGAGGATGATGAGTCAGATTTGTTGTGGCCGGGTAGTTTTCGTCAGGTTGTCGAGGCAGGTGATAGTCATCAGAATTTCATACTGACTGGAAGTTCGGATTTGAGTTTTACTGGGGTCAATCCACCTGTAGACATAGAGAACTCAACACCAGATTTGACTTTGAAACTTTGA 774 0.4328 MKPNFDLEVEAHAEYESEVSSQVASNVSIQETSIGPCSDSLTNISHTTNPIGSHPNSDAISLDLTLNFKNSEPGGRDSIGFSFSSTSESSNEPASQTTAATISRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRALRMGFFSERYASLASLPLHGSFRSLGVKAHSSLHHGFSPTMRPPEIKSNARFDQGYVGIPIFLEDDESDLLWPGSFRQVVEAGDSHQNFILTGSSDLSFTGVNPPVDIENSTPDLTLKL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0751 257 Gene3D Classic Zinc Finger 84 149 - -
Vra6g0751 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Vra6g0751 257 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 257 - -
Vra6g0751 257 MobiDBLite consensus disorder prediction 79 98 - -
Vra6g0751 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Vra6g0751 257 PANTHER ZINC FINGER PROTEIN JAGGED 1 257 IPR045320 GO:0003700
Vra6g0751 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0751 Vra-Chr6 7265138 7268596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0751 88 257 C2H2 Transcription Factor Family AT1G66140 51.741 9.06e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra6g0751 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0751 - - gmx:100794851 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0921 3 9240592 9243628 Vra6g0751 6 7265138 7268596 PCT