Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0750 ATGGTGACCAGAACAACCACCACCACCACCACCACCTACTTTCCAAATCCTCTACCCTTTTTCATTTTCTTAACCATGATGACCTTTTTCGCCAACTCCCAGGACGATGTTTCGGTAATGCTGGCTCTCAAGAACAGCCTCAACCCGCCGGGATGGACCGGCCCGGACCCATGCAAGTGGGACCATGTCAGGTGCTCTGAAGATAAACGGGTCACCCGGATCCAAATCGGCCGCCTCAATCTCCAGGGTACTCTCCCTGCAACTCTTCAGAACTTGACCCAGTTGGAACAGTTGGAGCTCCAATACAACAACATCTCGGGTCCCATTCCCTCTCTTAACGGCTTGACCAACCTCCGTGTCTTCATTGCCAGCAACAACCGCTTCTCCGCCGTCCCCGCCGACTTCTTCGCCGGCATGTCGCAGCTCCAGGCGGTGGAGATCGACAACAACCCCTTTGAGCCCTGGGAGATCCCTCAGACTCTCCGAAACGCTTCTGTGCTTCAGAACTTCTCCGCCAACTCTGCCAATGTCAGAGGCACTTTGCCGGATTTCTTCAGCTCCGACGTGTTTCCTGGTTTGACGGTTTTGCACTTGGCCATCAACAACCTCGAGGGGACGTTGCCTTTGAGCTTTTCTGGCTCTCAGATTCAGTCTTTGTGGTTGAATGGGCAGAAGAGCGTTAACAGGCTCGGTGGCAGTGTTGCTGTTTTGCAGAACATGACTTTCTTGACGGAGGTTTGGTTGCACTCCAATGCTTTTACGGGTCCATTGCCTGATTTGTCCGGATTGAAGAGTTTGAAGGTTTTGAGTTTGAGGGATAACAGGTTTACGGGTCCTGTCCCGCCTTCGTTGGTGGGTCTCAAGACACTTGAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGTCCTATGCCGGTGTTTGGCAATGGAGTTGAGGTGGATAACGATAAGGATTCCAACAGTTTTTGTTTGTCAGGACCTGGTGATTGTGATTCCAGGGTGCAGGTTCTTCTTTCTGTTATTGGGCTTATGGGGTATCCTCAAAGGTTTGCCGAGGGTTGGAAGGGGAATGATCCCTGTGCTGATTGGATTGGAATTGCTTGTGGAGATGGGAATATAACTGTTGTTAATTTTCAGAAGATGCAACTTAGTGGTGAGATATCCCCAGACTTTTCAAAGATTGAATCTTTGCAAAGAATAGTACTTGCGGATAACAATCTCACTGGTTCAATTCCAGTAGAGCTTACTACTTTGCCTCGGCTTAGTCTATTGAATGTTGCGAACAATCAGCTTTATGGGAAGGTGCCGAGTTTTAGGAGTAATGTAGTTGTGAGTACTAATGGTAATGTTGATATAGGGAAGGATAAGAGTAGCCAGTCCCCTCAGGGTTCAATGTCTCCAACGGCTCCCGATTCAAAGGGAGAAAACGATGGGGGTTCTGAAAATGGTGGCAAAAAGTCTTCCCATGTGGGAGTGATCGTGTTTTCAGTGATTGGGGCGGTTTTTGTGGTTTCTATGATTGGTTTCCTGGTTTTCTGCCTGTTTAGGATGAAGCAAAATAAGTTGAGCAGGGTCCAGAGCCCAAATGCTCTAGTTATTCATCCTAGGCATTCTGGGTCTGATAATGAGAGTGTGAAGATAACAGTTGCAGGTTCAAGTGTCAGTGTTGGTGGTGCTAGTGAAACACGAACCATACCTGGCAGTGAGACTGGAGATATCCAAATGGTTGAAGCCGGAAACATGGTCATTTCCATTCAAGTTCTAAGGAATGTTACAGACAATTTCAGTGAGAAGAACATATTGGGACAAGGAGGTTTTGGAACTGTTTATAGAGGTGACCTCCATGATGGTACAAGAATAGCAGTGAAAAGAATGGAGTGTGGGGCAATAACAGGGAAGGGTGCAGTAGAATTCAAGTCTGAAATTGCTGTTTTGACAAAAGTTCGTCATCGACATCTTGTGGCTCTTCTAGGTTACTGTTTGGACGGGAATGAGAAGCTCCTTGTATACGAATACATGCCTCAAGGAACATTGAGTAGGCATCTTTTCAACTGGCCAGAGGAAGGACTGGAACCATTGGAGTGGAATAGAAGATTGACTATTGCCTTAGACGTGGCAAGGGGTGTCGAGTACCTCCATGGCTTGGCCCATCAAAGCTTCATACACAGGGACTTAAAACCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCTGATTTTGGTCTTGTGCGTCTTGCTCCGGAAGGAAAAGCCTCTATAGAAACAAGAATTGCAGGAACTTTTGGATATTTGGCACCAGAATACGCAGTGACAGGCCGTGTGACAACTAAAGTTGACGTGTTCAGCTTTGGGGTGATATTGATGGAGCTGATAACAGGAAGAAAAGCACTTGATGAGACTCAACCCGAGGATAGTATGCACCTTGTAACATGGTTCCGGAGAATGTCCATAAATAAGGACTCCTTCCGCAAGGCCATTGACTCCACAATTGATCTCAACGAGGAAACTCTTGCCAGTATTCACACTGTTGCAGAGTTAGCTGGCCACTGCTGTGCCAGGGAGCCATATCAAAGGCCTGACATGGGTCATACAGTTAACGTGCTTTCTTCTCTTGTTGAACTCTGGAAACCATCCGATCAGAATTCTGAAGATATATATGGCATTGACCTTGACATGTCCTTGCCTCAAGCACTTAAAAAGTGGCAGGCTTATGAAGGTAGAAGTCAAATGGAGTCCTCTTCTTCATCTTCACTTCTACCAAGCTTGGATAACACACAAACAAGTATACCTACTCGCCCATATGGATTTGCAGATTCTTTCACATCAGCAGATGGTAGGTGA 2850 0.4667 MVTRTTTTTTTTYFPNPLPFFIFLTMMTFFANSQDDVSVMLALKNSLNPPGWTGPDPCKWDHVRCSEDKRVTRIQIGRLNLQGTLPATLQNLTQLEQLELQYNNISGPIPSLNGLTNLRVFIASNNRFSAVPADFFAGMSQLQAVEIDNNPFEPWEIPQTLRNASVLQNFSANSANVRGTLPDFFSSDVFPGLTVLHLAINNLEGTLPLSFSGSQIQSLWLNGQKSVNRLGGSVAVLQNMTFLTEVWLHSNAFTGPLPDLSGLKSLKVLSLRDNRFTGPVPPSLVGLKTLEVVNLTNNLFQGPMPVFGNGVEVDNDKDSNSFCLSGPGDCDSRVQVLLSVIGLMGYPQRFAEGWKGNDPCADWIGIACGDGNITVVNFQKMQLSGEISPDFSKIESLQRIVLADNNLTGSIPVELTTLPRLSLLNVANNQLYGKVPSFRSNVVVSTNGNVDIGKDKSSQSPQGSMSPTAPDSKGENDGGSENGGKKSSHVGVIVFSVIGAVFVVSMIGFLVFCLFRMKQNKLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGASETRTIPGSETGDIQMVEAGNMVISIQVLRNVTDNFSEKNILGQGGFGTVYRGDLHDGTRIAVKRMECGAITGKGAVEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLEPLEWNRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDETQPEDSMHLVTWFRRMSINKDSFRKAIDSTIDLNEETLASIHTVAELAGHCCAREPYQRPDMGHTVNVLSSLVELWKPSDQNSEDIYGIDLDMSLPQALKKWQAYEGRSQMESSSSSSLLPSLDNTQTSIPTRPYGFADSFTSADGR* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0750 949 MobiDBLite consensus disorder prediction 449 475 - -
Vra6g0750 949 Gene3D Ribonuclease Inhibitor 331 456 IPR032675 -
Vra6g0750 949 ProSiteProfiles Protein kinase domain profile. 595 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0750 949 MobiDBLite consensus disorder prediction 913 949 - -
Vra6g0750 949 PANTHER RECEPTOR PROTEIN KINASE TMK1 25 949 - -
Vra6g0750 949 ProSitePatterns Protein kinases ATP-binding region signature. 601 623 IPR017441 GO:0005524
Vra6g0750 949 SMART LRR_typ_2 115 138 IPR003591 -
Vra6g0750 949 SMART LRR_typ_2 190 213 IPR003591 -
Vra6g0750 949 SMART LRR_typ_2 263 287 IPR003591 -
Vra6g0750 949 Gene3D Phosphorylase Kinase; domain 1 556 672 - -
Vra6g0750 949 PANTHER OSJNBA0070M12.3 PROTEIN 25 949 - -
Vra6g0750 949 SUPERFAMILY L domain-like 65 439 - -
Vra6g0750 949 Gene3D Ribonuclease Inhibitor 33 330 IPR032675 -
Vra6g0750 949 Gene3D Transferase(Phosphotransferase) domain 1 673 893 - -
Vra6g0750 949 MobiDBLite consensus disorder prediction 449 486 - -
Vra6g0750 949 SMART serkin_6 595 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0750 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 720 732 IPR008271 GO:0004672|GO:0006468
Vra6g0750 949 Pfam Protein tyrosine and serine/threonine kinase 598 868 IPR001245 GO:0004672|GO:0006468
Vra6g0750 949 MobiDBLite consensus disorder prediction 913 938 - -
Vra6g0750 949 ProSiteProfiles Leucine-rich repeat profile. 94 116 IPR001611 GO:0005515
Vra6g0750 949 SUPERFAMILY Protein kinase-like (PK-like) 571 879 IPR011009 -
Vra6g0750 949 CDD STKc_IRAK 601 874 - -
Vra6g0750 949 Pfam Leucine rich repeat N-terminal domain 334 368 IPR013210 -
Vra6g0750 949 Pfam Leucine rich repeat N-terminal domain 34 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0750 Vra-Chr6 7242781 7246761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0750 81 877 Receptor kinase-like Gene Family AT5G07280 31.515 1.19e-82 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vra6g0750 PK_Tyr_Ser-Thr 6.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0750 - K00924 gmx:100789646 1625.53