Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0749 ATGGTATTGTCGTGGACCAGAGGGAGAGTGTTCCGGCGTGCTCGGAAGGGGAAAGAGTTGAGTTCCGGTAGCGATTTGGAGATAGAGATTGCGATCCCCACCCACTTCCGGTGCCCGGTAACCTTGGACATGATGAAAGACCCCGTGACGATGTCCACGGGGATAACCTACGACAGAGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTTACGAAGACGGAGTTGAACAGCTTCGAGATGATCCCGAACCACTCCATTCGGAGGATGATTCAGGATTGGTGCGTGGAGCACCGTTCCTACGGGATCGAACGGATCCCCACTCCTCGGATCCCCGTGTCTCCGTACGAGGTTGCTGACACGTGTACGAAAATCCTGTCGGCGGCGCAGCACGGGGACGAGAACAAGTGTGTGGAGTTGGTGAGGAAGATTAAGGCGTGGGGGAAGGAAAGTGAGAGGAACAAGAGGTGCATAGTGGTCAACGGTGCTGCTCTAGCACTGGCTAATGCGTTTAACATTTTCTCACGTGGGGTGGTTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGGGCGTTGACGTGGATGCGTCCTCTTTCAGAAGATGGTAGATCCGTGTTGGGGTCAGTGAGTTGTATTGGTTGCATGGTTTGGTTCATGAACGGTAAACAATCGGCGACAAGGCAGAACGCTGCTTTGTTGCTGAAGGAAATGCGTGTTGAGGCGTTGGTGAAATGTGAAGGGGTTTTGGAAGCTTTGGTTAACATGGTTAAGGAGGGAGTTGGTAGTGCTTCCTCGAAGGCATGCTTGTCAACGATTTTTAAGTTGGTTAATTCATCAAGTAATAGGGGTAGGAGTTGCGAGAGATTGGTGGAGTTGGGTTTGGTTTCGGTGTTGCTGGAGGTTCTTGTTGATGCTGAGAAAGGGGTGTGTGAGAAGGCTTTGGGGGTATTGGATTGTCTTTGTGATTCTAAACAAGGGTTGCAAATGGCTAAAAGTAACGCTTTGACTTTGCCTGTTGTGATTAAGAAGCTTTTGAGGGTATCTGAGTTGAGTTCCAGCTTTGCTGTTTCGGTTCTTTGGAAGGTTTGTGACAAGACAGAAGAAGAGATGTTGGTTGAGGCTCTTCAAATTGGTGTATTTCATAAACTCCTTGTTTTGTTGCAAGTGGGTTGTGCTGAGGGCACCAAAGAGAAAGCTACTGAGTTGTTGAAATCATTGAATAGTTGCAGGAGCAAAGCTGAGTGTGTGGACTCCTCCTTGGATTTCAAGCACTTGAAGAAACCCTTCTAA 1305 0.4943 MVLSWTRGRVFRRARKGKELSSGSDLEIEIAIPTHFRCPVTLDMMKDPVTMSTGITYDRDSIEKWIESGNRTCPVTKTELNSFEMIPNHSIRRMIQDWCVEHRSYGIERIPTPRIPVSPYEVADTCTKILSAAQHGDENKCVELVRKIKAWGKESERNKRCIVVNGAALALANAFNIFSRGVVEKNVVVLDEILGALTWMRPLSEDGRSVLGSVSCIGCMVWFMNGKQSATRQNAALLLKEMRVEALVKCEGVLEALVNMVKEGVGSASSKACLSTIFKLVNSSSNRGRSCERLVELGLVSVLLEVLVDAEKGVCEKALGVLDCLCDSKQGLQMAKSNALTLPVVIKKLLRVSELSSSFAVSVLWKVCDKTEEEMLVEALQIGVFHKLLVLLQVGCAEGTKEKATELLKSLNSCRSKAECVDSSLDFKHLKKPF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0749 434 PANTHER WDSAM1 PROTEIN 7 434 IPR045185 GO:0061630
Vra6g0749 434 SUPERFAMILY ARM repeat 126 411 IPR016024 -
Vra6g0749 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Vra6g0749 434 CDD RING-Ubox_PUB 36 77 IPR045210 -
Vra6g0749 434 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 434 - -
Vra6g0749 434 SUPERFAMILY RING/U-box 27 108 - -
Vra6g0749 434 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Vra6g0749 434 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Vra6g0749 434 Gene3D - 123 422 IPR011989 -
Vra6g0749 434 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0749 Vra-Chr6 7233674 7235314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0749 24 434 U-box Gene Family AT5G37490 44.737 4.10e-120 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0749 - - gmx:100795913 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0922 3 9247760 9249473 Vra6g0749 6 7233674 7235314 PCT