Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0748 ATGTCTTTCGCTCTCATCGAAGCTTGCAAGAAGCGAAAACGGTGGCCAAAATTTTTCAGGTTTCATTCATTCGGTGACCCTGGTATCCCAATTGTACCATTGGGTACTTTCCGCGATAACGTTCGGGTTTTCCTTCAAGAAGCTGGAGAACCTGAAGATTATAGTGTCTCCGGGAATCCCCTATGGTGTACCCTTCTCATCCATGATAAGTCCAACGTAATGGCTCCTCTTTACACCGTCGAAGAGCACGTCTACCACTCTTCGCACCCCTTCTGCGATCACTGCCGCTGCGTAGGTTGGAGTGGCCATTTTGTATCAAAGAGAAGGTATCATTTTATAATCCCGATGGACAGTGGGTGGCATAAGCCCTTAGATGAAGATTCTATAGACAGTCAGAGGCATCTGTTGCATGGGGTGATTCATTGCAATGGATATGGCCATTTGCTCTGTGTAAATGGCATTGAAGGAGGCTCCAAGGTTCTTAGTGGCAGAGAGATTATGGATCTATGGGATAGGGTATGCACCAACCTCCGAGTAAGGAAAGTTGCAGTTGAAGATGTTTCGTGTAAGAGGTCTATGGACCTTCGCTTACTTCATGGAGTCGCCTATGGACACTCCTGGTTTGGCAGATGGGGTTATAGATTTTGCCGTGGAAGCTTTGGAGTGACAGAACCAGACTACAATGATGCAATGACAACGCTTGGCTCCTTGGAGCTAGACATGATTGCAAAAGATTTGAGTAAGACCAAGTACAACAAAGAAATCAAACAAATGATTCGGTGCTATAGAGATATGAGTGAGACTCATATTATCTCACTCAGGGATCTTCTAAGGTTTATGCTTACTGTAAAGTCTTCCCGTGCTCCAGCGCCTAAGACAACAGTCTCCTATTCTGCCGCCGCAGCTGCTGCTGATTCTACCTGTTCAGCATTAATGTCAAGAAATTCAACCAAACACACTCCTCCAACCAGATCAAATTCCATGAAGGAGAAATCTGTTAGGTATAAGAAGTTCAGCAATGCAGTGACTAACATGGATAGTAGGTGGCCCACAAGGAGGCTAGAGTTTGCCGCTCAAGTGATTGTGGACGCACTGAAAGAAAACAAGGCTGTTAAACCAGGCACAGGTGGGATGGCAAGGCAAGACGTGAGAGATGCAGCTAGGCTTCACATTGGTGACACAGGTTTACTTGATTATGTACTTAAATCACTCAACAATGTCATTGTTGGAAACTATGTTGTTCGTCGGATGGTGAATCCATCAACTAGAATTCTAGAGTACACAATTCACGATCTTGGCAACGGGTACAAAGCCCCTGAACTGGAGACTGAGGGGATGGCTTATGTAGATCAACAAGTAGTAGAGTCATCTTGGGTGCCTGGTAACGATGTTTACTGCGACGTACTGTTTTTGTACAAGAATGTGCTATTGGGCTACCCCGATTCAGAAATAGTGGACTTGGCCATTCAGACAATTCTAGACAGCAGATACTTCGTAAAGGAGTGGGCAGAGAGGGATGAAATAGAGGAGCAGTCATTGACATTCATTTGCCGACTGCAACCAAATTTTGTGGACAAAAAGTATGAGTTGAAAGGTCTACCATGTGGTGAGGTTGTGGTGGTTCCACTGCATGCAACGGTTGGAGACTTGAAGAGGGCTTCTGAGGCTGCTCTTAGGGACACTTACTGCATTGCAGAAAGGCTTATAGTGACAGACATTAAACAACTTATGGGAGTGAGTGATGAGGAAGTGCTGTTTGGACTAATCCAGTCCGGTGTAGAACTTTGTGTGAGGGGAATTGCTATTGATTTGTGCACCAATTTGAAGTATCAGGGTGGATCTGACAACTGGAAGGTGAGATGCGAGTGTGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAAGTGTGGCAGCATACTCGCTGCTGTGGCATAGACGATTCTGAGACAGTGCCACCACTTTTTGTCTGCACTGGTTGCTGTGATTCACTCGTACCCTCCAGGACCGAATCATCCTTTTGTTCAGATTCTCCTGATTCTTTTCTCATTCCAGCAGACCCTTCTCTTATGCTAGAATATCAGTATGCGTGA 2106 0.4549 MSFALIEACKKRKRWPKFFRFHSFGDPGIPIVPLGTFRDNVRVFLQEAGEPEDYSVSGNPLWCTLLIHDKSNVMAPLYTVEEHVYHSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDSGWHKPLDEDSIDSQRHLLHGVIHCNGYGHLLCVNGIEGGSKVLSGREIMDLWDRVCTNLRVRKVAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEPDYNDAMTTLGSLELDMIAKDLSKTKYNKEIKQMIRCYRDMSETHIISLRDLLRFMLTVKSSRAPAPKTTVSYSAAAAAADSTCSALMSRNSTKHTPPTRSNSMKEKSVRYKKFSNAVTNMDSRWPTRRLEFAAQVIVDALKENKAVKPGTGGMARQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHDLGNGYKAPELETEGMAYVDQQVVESSWVPGNDVYCDVLFLYKNVLLGYPDSEIVDLAIQTILDSRYFVKEWAERDEIEEQSLTFICRLQPNFVDKKYELKGLPCGEVVVVPLHATVGDLKRASEAALRDTYCIAERLIVTDIKQLMGVSDEEVLFGLIQSGVELCVRGIAIDLCTNLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSLVPSRTESSFCSDSPDSFLIPADPSLMLEYQYA* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0748 701 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 675 - -
Vra6g0748 701 MobiDBLite consensus disorder prediction 312 332 - -
Vra6g0748 701 ProSitePatterns Zinc finger PHD-type signature. 621 665 IPR019786 -
Vra6g0748 701 SUPERFAMILY FYVE/PHD zinc finger 610 671 IPR011011 -
Vra6g0748 701 CDD PHD_MMD1_like 621 665 - -
Vra6g0748 701 MobiDBLite consensus disorder prediction 312 328 - -
Vra6g0748 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 670 IPR013083 -
Vra6g0748 701 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 675 - -
Vra6g0748 701 SMART PHD_3 620 666 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0748 Vra-Chr6 7224159 7227021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0748 10 671 PHD Transcription Factor Family AT5G22260 33.569 7.32e-119 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0748 - - gmx:100797388 1235.32