Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0735 ATGAAGTCTGCGCAGGTCAAAGAAGCGATTCTCTTTACTCTCCTAACGTGCTTCTTCGCCATTGCCGATTCCGATCTAGCTTCGGACAGAGCCGGGCTAGTGTCACTCCGAAGCGCGTTGGGGGGACGCACCCTGCTATGGAACACCACCCAAACAAACCCTTGCAGGTGGACCGGCGTCACCTGCACCAACGACAGAGTAACCATGCTGCGCCTCCCAGCGATGGGTCTCTCCGGTTCTCTACCCTCCGGTTTGGGAAACCTCACCGAACTGCAGACGCTCTCCCTCCGGTTCAACGCTCTAACCGGACCAATCCCCGCGGATTTTGTCAACCTCAAAGCGCTTCGGAACCTCTATCTCCAAGGAAACTTCTTCTCCGGCGAAGTTCCCGATGCGGTATTCGCGTTGCAGAACCTCGTGAGGTTGAATTTAGGTAACAACAATTTCAGCGGCGAGATTTCGCCCAAGTTCAATGGTCTCACTCGTTTGTCCACTCTCTATCTCGAACGCAACAATTTTACTGGTTCAATCCCTGAACTCAGTGTTCCGCCTCTGGATCAGTTCAACGTCTCGTATAATTCCCTTACCGGTCCCATTCCGAACCGGTTTTCGAGTCTGGACCAAACCGCTTTTCTCGGGAACTCACTCTGCGGGAAGCCCTTGCAAAGCTGCCCCGGAACCGAGGAGGGAAAGAGTAAACTGTCCGGTGGTGCCATTGCGGGTATTGTGATAGGTTCCGTGGTTGGTTTGCTGTTGATTCTGCTGCTTTTGTTCTTTTTGTGTAGAAAAAGGAGTGGGAAAAACGATGAAAGTGTCTCAACAGGGAAGCGTGATGTGGGAGGTGAAGTGTCTCGTGAAAAGAGTGTTGAGAGTGGGAATTCTGGTTCGGCGGTGGCAGGTTCGGTGGAGAAGAGTGATGTTCAAAGCAGTGGTGGCGGAGATAAAAGTTTGGTGTTTTTTGGGAATGTGAATAGGGTGTTTAGTTTGGATGAGTTGTTGAGAGCTTCTGCGGAAGTGTTGGGGAAAGGAACGTTTGGAACGACTTACAAGGCGACTTTGGAAATGGGGGTGAGTGTGGCGGTGAAGAGGTTGAAGGATGTCACAGCCGCGGAGAGGGAATTCAGGGAGAAGATCGAGCAAGTGGGGAAGATGGTTCATCACAACTTGGTCCCACTAAGGGGTTATTACTTTAGCAGGGATGAGAAGCTTGTTGTCTATGATTACATGCCTATGGGAAGCTTATCTGCTCTCTTGCATGCAAATGGTGGGGTGGGGAGGACTCCACTGAATTGGGAAACAAGGTCTGCCATTGCTCTTGGTGCTGCTCGTGGGATTGCATACATTCATTCTCATGGCCCAACATCCTCTCATGGGAACATCAAGGCATCGAATATCCTTCTGACGAAATCTTTTGAAGCTCGTGTCTCTGACTTTGGCCTTGCTTACCTTGCTCTTCCAACCTCTACACCAAACCGTGTTTCTGGTTACAGAGCACCAGAGATCACTGATGCGCGAAAAGTATCCCAAAAAGCTGATGTCTATAGCTTTGGCATCATGCTTCTGGAGCTGCTTACAGGGAAGGCTCCTGCTCATTCTTCGCTGAATGACGAAGGGGTGGACCTCCCAAGATGGGTTCAATCTGTGGTTGAAGGTGAGTGGAACACTGATGTATTTGACATGGAGCTTCTGAGGTACCAGAGTGTTGAGGAGGAAATGGTGAAGCTCTTGCAGCTTGCCCTTGAATGCACTGCACAATATCCTGATAAGAGACCTTCAATGGACGTGGTAGCAAGCAAGATTGAAGAAATTTGCCATTCTAGTTTAGAGAAAGAGGAAGGGAAGAATCATGATTTTAAAGATCCTGATAATGGATTTTCGCAACAATACTACTCTGTTGACTCAGGGGTGTCACAAGCTTGA 1920 0.4958 MKSAQVKEAILFTLLTCFFAIADSDLASDRAGLVSLRSALGGRTLLWNTTQTNPCRWTGVTCTNDRVTMLRLPAMGLSGSLPSGLGNLTELQTLSLRFNALTGPIPADFVNLKALRNLYLQGNFFSGEVPDAVFALQNLVRLNLGNNNFSGEISPKFNGLTRLSTLYLERNNFTGSIPELSVPPLDQFNVSYNSLTGPIPNRFSSLDQTAFLGNSLCGKPLQSCPGTEEGKSKLSGGAIAGIVIGSVVGLLLILLLLFFLCRKRSGKNDESVSTGKRDVGGEVSREKSVESGNSGSAVAGSVEKSDVQSSGGGDKSLVFFGNVNRVFSLDELLRASAEVLGKGTFGTTYKATLEMGVSVAVKRLKDVTAAEREFREKIEQVGKMVHHNLVPLRGYYFSRDEKLVVYDYMPMGSLSALLHANGGVGRTPLNWETRSAIALGAARGIAYIHSHGPTSSHGNIKASNILLTKSFEARVSDFGLAYLALPTSTPNRVSGYRAPEITDARKVSQKADVYSFGIMLLELLTGKAPAHSSLNDEGVDLPRWVQSVVEGEWNTDVFDMELLRYQSVEEEMVKLLQLALECTAQYPDKRPSMDVVASKIEEICHSSLEKEEGKNHDFKDPDNGFSQQYYSVDSGVSQA* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0735 639 Gene3D Phosphorylase Kinase; domain 1 304 408 - -
Vra6g0735 639 MobiDBLite consensus disorder prediction 608 639 - -
Vra6g0735 639 SUPERFAMILY L domain-like 46 212 - -
Vra6g0735 639 CDD STKc_IRAK 340 603 - -
Vra6g0735 639 MobiDBLite consensus disorder prediction 287 311 - -
Vra6g0735 639 PANTHER OS05G0588300 PROTEIN 12 609 - -
Vra6g0735 639 PANTHER INACTIVE RECEPTOR KINASE-RELATED 12 609 - -
Vra6g0735 639 SUPERFAMILY Protein kinase-like (PK-like) 338 598 IPR011009 -
Vra6g0735 639 Gene3D Ribonuclease Inhibitor 182 228 IPR032675 -
Vra6g0735 639 Gene3D Ribonuclease Inhibitor 28 181 IPR032675 -
Vra6g0735 639 MobiDBLite consensus disorder prediction 267 285 - -
Vra6g0735 639 Gene3D Transferase(Phosphotransferase) domain 1 409 626 - -
Vra6g0735 639 MobiDBLite consensus disorder prediction 267 311 - -
Vra6g0735 639 MobiDBLite consensus disorder prediction 622 639 - -
Vra6g0735 639 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Vra6g0735 639 Pfam Protein kinase domain 337 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0735 639 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Vra6g0735 639 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0735 Vra-Chr6 7064251 7067603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0735 25 603 Receptor kinase-like Gene Family AT1G48480 57.329 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra6g0735 Pkinase 1.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0735 - - gmx:100801103 1027.7