Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0726 ATGGCTACCGAAGAGGTTAATAAACCTCAGTCACTTCCTCCATACCCCGAGCTGATACTGAAAGCGATTGAAGCTCTGAGTGAACCAAGTGGATCCAGCAAATCAGCAATATCAAAGTACATAGAAGCGATCTATGGTGAGTTGCCAGATTCAACCGTTTTGGGGAATGAACTGAACAAACTGAAAGAGAGTGGAGAGCTTGTGTTCAATAAGAACAACTACATGAAAGCTGACCCAAGTGCCCCACCAAAGAGGGGCCGTGGAAGGCCACCAAAGCCAAAGGCCCCTGTGCCACCAGGCACCGTCGTCTCCCCTCCTCGGCCAAGGGGTCGTCCCCCAAAGGACCCAAACGCGCCTCCGAAGTCTCCAAAGCCCAAGCCCACCCCTGGAAGTGGAAGGCCAAGGGGGAGGCCAAAGAAGATTCCTCGCTCTCCGACGGCGGCGTATCCGGCCGCCGTATCCAGCGGAAGGCCCAGGGGTAGGCCTCCAAAGGTGAAGCCTCAGTTGACAGAAGTGAGCGTTGAGTCATAG 531 0.548 MATEEVNKPQSLPPYPELILKAIEALSEPSGSSKSAISKYIEAIYGELPDSTVLGNELNKLKESGELVFNKNNYMKADPSAPPKRGRGRPPKPKAPVPPGTVVSPPRPRGRPPKDPNAPPKSPKPKPTPGSGRPRGRPKKIPRSPTAAYPAAVSSGRPRGRPPKVKPQLTEVSVES* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0726 176 SUPERFAMILY "Winged helix" DNA-binding domain 8 85 IPR036390 -
Vra6g0726 176 PRINTS AT-hook-like domain signature 84 94 IPR017956 GO:0003677
Vra6g0726 176 PRINTS AT-hook-like domain signature 104 115 IPR017956 GO:0003677
Vra6g0726 176 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Vra6g0726 176 PANTHER HMG-Y-RELATED PROTEIN A 1 172 IPR031059 GO:0003677|GO:0005634
Vra6g0726 176 Pfam linker histone H1 and H5 family 13 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra6g0726 176 PANTHER HISTONE H1 1 172 - -
Vra6g0726 176 SMART h15plus2 9 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra6g0726 176 MobiDBLite consensus disorder prediction 65 176 - -
Vra6g0726 176 PRINTS High mobility group protein (HMGY) signature 82 94 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vra6g0726 176 PRINTS High mobility group protein (HMGY) signature 97 108 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vra6g0726 176 PRINTS High mobility group protein (HMGY) signature 108 119 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vra6g0726 176 PRINTS High mobility group protein (HMGY) signature 121 140 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vra6g0726 176 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Vra6g0726 176 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Vra6g0726 176 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Vra6g0726 176 SMART AT_hook_2 156 168 IPR017956 GO:0003677
Vra6g0726 176 MobiDBLite consensus disorder prediction 92 132 - -
Vra6g0726 176 Gene3D - 7 94 IPR036388 -
Vra6g0726 176 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0726 Vra-Chr6 6901471 6902852 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0726 - - gmx:100793697 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0939 3 9431546 9432646 Vra6g0726 6 6901471 6902852 PCT