Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0721 ATGGGAGATGCAAGTGAAGTGAAAGGGGAATGTTCAGGCAGTGGGAAGGGGAAGAAGATGTTTGAGGAAGAAGAAAACGAAGACAAGTTGTTGGCAGGCGTAGGATACAAAGTGTGTTCCTCGGACATGGTTGACGTGGCACACAAGCTCGACCAATTGGAGATGGTAATGGAGGAAGATGGAATTTCCCATCTCGCCTCCAACACTGTGCATTACGACCCGACCGATCTTTACGGTTGGGTCCAGAACATTCTCAACAACGCGCCCAATCACACCATCACCACCAACAGCAACAACGCTGTCATTCCATCGCCGTTAATCACTGTCCCGGAGAACGATCTAACAGCGATTCCATTGCCATACATCGAAGCGTACCCACAAACAGAAAATCAGAATTGCCACAAGCGATTCAAGGGTTCTTCATCTCCGTTGTGGCCCGCGATTTCATCGGACAACGTTCTTCCGGTGGTTCTGGTGGAGGAAGCCGGCGTGTATCTCGTTCACGCACTCATGGCCTGCGCGGAGGCCATTCAATTAGGAAACGCAAGCCTCGCGTCAAGCCTCGTGAAGCATGCAGGAACCCTCGCTGCGTCGCAAGGAGGTTCAATGGGGAAGGTTGCATCCTTCTTCGCTCAAGCTCTCGCTCGAAGAATCTATGGATTCTATCCTTACGAGACTCTAGACTCTTCCTACTCCGACATGCTTCACACACATTTCTACGAATCGAGCCCGTACCTGAAATTCGCGCACTTCACGGCGAACCACGCAATCCTCGAAGCATTCGCCACCGCGGACACGGTGCATGTCATCGATTTTGGCCTGAAGCAGGGGTTGCAGTGGCCGGCGTTCATGCAAGCACTAGCGGTCCGTCCCGGAGGTCCGCCAGCGTTCCGCCTCAGCGGGATCGGACCACCGCGGCTCGACGACCCCGATTCCGACTCGCTGAGTCAGGTCGGCTTGAAACTGGCGGAACTCGCTCGAAAAATTAGGATTCAATTCGAGTTCCGCGGATTCGTGTGTAACAGTTTAGCCGATCTAGATCCGTCCGTGCTCGACATTCGAGCAGGAGAATTCGTCGCGGTTAACTCTATCTTCGAGCTTCACCGCTTGCTGGCGCGACCTGTTGACATGGAAAAGGTGTTAGCCACGGTTAAGAGGATTAAACCGGAGATTGTTACCGTGGTGGAGCAAGAAGCGAATCACAACGGTCCGGTTTTTCTGGAGCGGTTCACGGAGGCATTGTACTATTACTCTAGTTTGTTTGACTCGATGGAGGGATCGGTGGCGGCGCCGAATGAACAGGCGTTGGTGATGGCGGAGATGTACTTGGGGAGGCAGATATGTAACGTTGTGGCGTGTGAGGGGGAAGAACGCGTGGAGAGGCACGAAACGCTGGGTCAGTGGAGAGCGCGGCTCGGTTTGGGCGGGTTGGAACCGGTTCGCATGGGTTCGAACGCGTTCAGACAAGCGAGGATGTTACTGGGCCTATACGCTGAGGGGGGAGAAGGGTACAGAGTGGAAGAAAACAATGGGTGCCTCTTGCTCGGGTGGCACACCAGGCCACTCGTTGCCTCGTCCGCGTGGAGACTCGCGCCCAATGGTTTGAACCCAGTTAGAGATCAGAATGATATGAACCAAGATTCCCGATTCTGTTAA 1656 0.5399 MGDASEVKGECSGSGKGKKMFEEEENEDKLLAGVGYKVCSSDMVDVAHKLDQLEMVMEEDGISHLASNTVHYDPTDLYGWVQNILNNAPNHTITTNSNNAVIPSPLITVPENDLTAIPLPYIEAYPQTENQNCHKRFKGSSSPLWPAISSDNVLPVVLVEEAGVYLVHALMACAEAIQLGNASLASSLVKHAGTLAASQGGSMGKVASFFAQALARRIYGFYPYETLDSSYSDMLHTHFYESSPYLKFAHFTANHAILEAFATADTVHVIDFGLKQGLQWPAFMQALAVRPGGPPAFRLSGIGPPRLDDPDSDSLSQVGLKLAELARKIRIQFEFRGFVCNSLADLDPSVLDIRAGEFVAVNSIFELHRLLARPVDMEKVLATVKRIKPEIVTVVEQEANHNGPVFLERFTEALYYYSSLFDSMEGSVAAPNEQALVMAEMYLGRQICNVVACEGEERVERHETLGQWRARLGLGGLEPVRMGSNAFRQARMLLGLYAEGGEGYRVEENNGCLLLGWHTRPLVASSAWRLAPNGLNPVRDQNDMNQDSRFC* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0721 551 Gene3D - 26 87 IPR038088 -
Vra6g0721 551 SMART DELLA_2 28 98 - -
Vra6g0721 551 Pfam Transcriptional regulator DELLA protein N terminal 28 87 IPR021914 -
Vra6g0721 551 ProSiteProfiles GRAS family profile. 157 529 IPR005202 -
Vra6g0721 551 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 23 529 IPR005202 -
Vra6g0721 551 MobiDBLite consensus disorder prediction 1 22 - -
Vra6g0721 551 Pfam GRAS domain family 166 529 IPR005202 -
Vra6g0721 551 PANTHER DELLA PROTEIN RGL1 23 529 IPR030006 GO:0003712|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0721 Vra-Chr6 6835500 6838056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0721 20 531 GRAS Transcription Factor Family AT2G01570 55.258 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra6g0721 GRAS 2.3e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0721 K14494 - gmx:100799695 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0941 3 9455736 9458190 Vra6g0721 6 6835500 6838056 PCT