Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0719 ATGAACACTGTTATCTGCCACCGCCTAAGGCTAAGTCCAAAACTTCTTCTCTATTCTTTCCCCAACCCCTCTTTCTCGTTCTCAACAACCACTTCCGATTCTGTCTCCTTCACCATATCTTACCTCACCAACACCTGTGGCTTCACACAAGAGGCTGCACTGAAACTATCCAAACAACTTCGTTTCAACACCGCCCAAAAACCCGAGTCCGTCATCTCCTTCTTCCAAACCCACGGTTTCTCCGCCCCCCAAATCCACCGCATCCTCAGCAACCGTCCCCAACTCATGGTATGCAACCCCACCCGAACGCTTCTCCCCAAATTCCACTTCTTGGCCTCCAAAGGCGTTTCTGCATCCGACGTCGTTTCCATTGTCACTAGGAACCCCCATTTCCTCTGTCGCAGCCTCAAAAACTGCATCTTCCCCAGCTTCCAACTCTTCCGAAGGTTCTTTTCTTCCGACCTCAGAGCCCTCACTGTTTTCGTCGACTGGCCCTATGTCATCGGCAAAACTCACTTGGAATCAAACGTTGAAAGGTTGCTCGACGCCGGAGTCTCGCACGTTGGCATTCGGCACTTGCTCTCCTCTCGGTCTTTGGCTCTCTGCTTCAACCTGAGAAACCTTGTGGAGGAAGTGAAGCTGTTGGGGTTTGACCCTCTGAAGGTGACCTTCGCTATGGCCCTTGAGGCCAAAAGTACTGTTTCCAAACCCCGTTGGGATGCCAAAGTCGACGTCTTGAAGAAATGGGGTTGGTCTGANGATGAGGTTTTGGTTGCGTTTAGGAAACAGCCTAAAATGATGCTCTGTTCCATGGAGAAACTTGATGCAGTGACGGGGTTTTGGGTGGGTCGGCTTGGATGGGATCGTTCTGCGCTTATTGCATACCCTTTGTTGTTTAGGTACAGTTTGGAGAAAAGACTTGTTCCGAGGGCTTTGGTTCTGCAGCATCTTCTCTCCAAAGGATTGGTGAAGAAGGATGCTAGCATCTTCTCACCATTTTCTAACACTGATGAGGAGTTTATGAAAAAGTATGTGAGATCTTTCAAGGAGGAAACACCCTGGTTACTAGAGCTATATCAGAAGGGACAGGGAGCATCCTAG 1101 0.495 MNTVICHRLRLSPKLLLYSFPNPSFSFSTTTSDSVSFTISYLTNTCGFTQEAALKLSKQLRFNTAQKPESVISFFQTHGFSAPQIHRILSNRPQLMVCNPTRTLLPKFHFLASKGVSASDVVSIVTRNPHFLCRSLKNCIFPSFQLFRRFFSSDLRALTVFVDWPYVIGKTHLESNVERLLDAGVSHVGIRHLLSSRSLALCFNLRNLVEEVKLLGFDPLKVTFAMALEAKSTVSKPRWDAKVDVLKKWGWSXDEVLVAFRKQPKMMLCSMEKLDAVTGFWVGRLGWDRSALIAYPLLFRYSLEKRLVPRALVLQHLLSKGLVKKDASIFSPFSNTDEEFMKKYVRSFKEETPWLLELYQKGQGAS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0719 366 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Vra6g0719 366 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Vra6g0719 366 SMART mt_12 158 186 IPR003690 GO:0003690|GO:0006355
Vra6g0719 366 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Vra6g0719 366 SMART mt_12 289 323 IPR003690 GO:0003690|GO:0006355
Vra6g0719 366 Gene3D Transcription termination factor 3, mitochondrial 170 352 IPR038538 -
Vra6g0719 366 Pfam mTERF 72 211 IPR003690 GO:0003690|GO:0006355
Vra6g0719 366 Pfam mTERF 239 340 IPR003690 GO:0003690|GO:0006355
Vra6g0719 366 PANTHER CGI-12 PROTEIN-RELATED 28 361 IPR003690 GO:0003690|GO:0006355
Vra6g0719 366 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0719 Vra-Chr6 6813606 6819049 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra6g0719 mTERF 8.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0719 K15032 - var:108336607 329.717