Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0718 ATGAACACTGTAATCTGCCACCGCCTAAGGCTAAGTCCAAAACTTCTTCTCTATTCTTTCCCCAAACCCTCTTTCCCGTTCTCAACAACCACTTCCGATTCTGTCTCCTTCACCATATCCTACCTCACCAACACCTGCGGCTTCACACCAGAGGCTGCACTGAAACTATCCAAACGACATCGTTTCAACACTGCCCAAAAACCCGATTCCGTCATCTCCTTCTTCCAAACCCACGGTTTCTCCACCTCCCAGATCCACCACATCCTCAGCAACTATCCCCAACTCATACTATGCAACCCCACCCGAACGCTTCTCCCCAAATTGCACTTCTTGACCTCCAAAGGTGTTTCTGCATCCGACGTCGTTTCCATTGTCACTAGGAACCCCCGTTTCCTCTGTAGCAGCCTCGAAAACTGTATCTTCCCCACCTTCCAACTCTTCCGAAGGTTCTTTCCCTCCGACCTCAAAGCCCTCACTGTTTTCTTCGCATGTCCCTATGTCATCGGCAACACTCACTTGTTGGCATCAAACGTTAAAAGGTTGCTCGACGCCGGAGTCGCGCACGTTGGCATTCGGCACTTGCTCTCTACTCGGTCTTTTTCTCTCTGCTCCGACCTGAGAACCCTTTTGGAGGAAGTGAAGCTGTTGGGGTTTGACCCTCTGAAGGTGACCTTCGCTATGGCCCTTGAGGCCAAAAGTACTGTTTCCAAACCCCGTTGGGATGCCAAAGTCGACGTCTTGAAGAAATGGGGTTGGTCTGAAGATGAGGTTTTGGTTGCGTTTAGGAAACATCCTAAAATGATGCTCTGTTCCATGGAGAAACTTGATGCAGTGACGGGGTTTTGGGTGGATCGGCTTGGATGGGATCGTTCTACGCTTATTGCGTATCCTTCGTTGTTTTTTTTCAGTTTGGAGAAAAGACTCGTTCCGAGGGCTTTGGTTCTGCAGCATCTTCTCTCCAGAGGATTGGTGAAGAAGGATGCTAGCTTCGTCACACCGTTTGTAAAGTCTGATGAGTGGTTTCTGAAAAAGTATGTGAGATATTTCACGGAGGAAACACCCTGGTTACTAGAGCTATATGAGAAGGGACAGGGAGCATCCTAG 1104 0.4909 MNTVICHRLRLSPKLLLYSFPKPSFPFSTTTSDSVSFTISYLTNTCGFTPEAALKLSKRHRFNTAQKPDSVISFFQTHGFSTSQIHHILSNYPQLILCNPTRTLLPKLHFLTSKGVSASDVVSIVTRNPRFLCSSLENCIFPTFQLFRRFFPSDLKALTVFFACPYVIGNTHLLASNVKRLLDAGVAHVGIRHLLSTRSFSLCSDLRTLLEEVKLLGFDPLKVTFAMALEAKSTVSKPRWDAKVDVLKKWGWSEDEVLVAFRKHPKMMLCSMEKLDAVTGFWVDRLGWDRSTLIAYPSLFFFSLEKRLVPRALVLQHLLSRGLVKKDASFVTPFVKSDEWFLKKYVRYFTEETPWLLELYEKGQGAS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0718 367 PANTHER CGI-12 PROTEIN-RELATED 29 362 IPR003690 GO:0003690|GO:0006355
Vra6g0718 367 SMART mt_12 122 152 IPR003690 GO:0003690|GO:0006355
Vra6g0718 367 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Vra6g0718 367 SMART mt_12 290 324 IPR003690 GO:0003690|GO:0006355
Vra6g0718 367 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Vra6g0718 367 Pfam mTERF 72 209 IPR003690 GO:0003690|GO:0006355
Vra6g0718 367 Pfam mTERF 240 341 IPR003690 GO:0003690|GO:0006355
Vra6g0718 367 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 29 362 - -
Vra6g0718 367 Gene3D Transcription termination factor 3, mitochondrial 170 353 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0718 Vra-Chr6 6801162 6803294 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra6g0718 mTERF 3.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0718 K15032 - var:108336607 346.665