LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra6g0714	ATGAACACTATTATCTGCCACCGCCTAAGGCTAAGTCCAAAACTTCTTCTCTATTCTTTCCCCAAACCCTCTTTCTCGTTCTCAACAACCACTTCCGATTCTGTCTCCTTCACCATATCCTACCTCACCAACACCTGCGGCTTCACACCAGAGGCTGCACTGAAACTATCCAAACGACTTCGTTTCAACACCGCCCAAAAACCCGATTCCGTCTTCTCCTTCTTCCAAACCCACGGTTTCTCCGCCCCCCAGATCCACCGCATCCTCAGGAAGTGCCCCGAACTCATGGTATGCGACCCCACCCGAAGGCTTCTCCCCAAATTCAACTTCTTGACCTCCAAAGGTGTTTCTCCTTCCGACGTCGTTTCCATTGTCACTAAGAACCCCCGTTTCCTCTGTCGCAGCCTCGAAAACTGCATCTTCCCCACCTTCCAACTCCTCCGAAGGTTCTTTCCCTCCGACCTCAGGGCCCTCACTGTTTTCGTCGCCTTTCCCTCTGCCATCGGCCACTGTCGCATGGCATCAAACGTTGAAAGGTTGCTCAACGCCGGAGTCGCGCACGTCGGCATTCGGCACTTGCTATCCACTCGGTCTTTTGTTCTCTGCTCCAACCTGAGAACCCTTTTGGAGGAAGTGAAGCTGTTGGGGTTTGACCCTCTGAAGGTAACCTTCACTGTTGCCCTTCAGGTCAAAATTACTGTTCCGAAACCCCTTTGGGTTGCCAAAGTCGACGTGTTGAAGAAATGGGGTTGGTCTGAGGATGAGGTTTTGGTTGCGTTTAGGAAACACCCTGCAATGATGCTCTGTTCCATGGAGAAACTTGATGCCCTGACGGGGTTTTGGGTGGGTCGGCTTGGATGGGATCGTTCTGAGCTTATTGCGTACCCTTGGTTGTTTAGCTACAGTTTGGACAAAAGACTCGTTCCGAGGGCTTTGGTTCTGCAGCATCTTCTCTCCAGAGGATTGGTGAAGAAGGATGCTTGCATCTCCACCCTATTTTGTGATTGA	1008	0.5139	MNTIICHRLRLSPKLLLYSFPKPSFSFSTTTSDSVSFTISYLTNTCGFTPEAALKLSKRLRFNTAQKPDSVFSFFQTHGFSAPQIHRILRKCPELMVCDPTRRLLPKFNFLTSKGVSPSDVVSIVTKNPRFLCRSLENCIFPTFQLLRRFFPSDLRALTVFVAFPSAIGHCRMASNVERLLNAGVAHVGIRHLLSTRSFVLCSNLRTLLEEVKLLGFDPLKVTFTVALQVKITVPKPLWVAKVDVLKKWGWSEDEVLVAFRKHPAMMLCSMEKLDALTGFWVGRLGWDRSELIAYPWLFSYSLDKRLVPRALVLQHLLSRGLVKKDACISTLFCD*	336

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra6g0714	335	Gene3D	Transcription termination factor 3, mitochondrial	159	334	IPR038538	-
	Vra6g0714	335	PANTHER	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	27	333	-	-
	Vra6g0714	335	Pfam	mTERF	240	333	IPR003690	GO:0003690\|GO:0006355
	Vra6g0714	335	Pfam	mTERF	73	209	IPR003690	GO:0003690\|GO:0006355
	Vra6g0714	335	SMART	mt_12	257	288	IPR003690	GO:0003690\|GO:0006355
	Vra6g0714	335	SMART	mt_12	289	323	IPR003690	GO:0003690\|GO:0006355
	Vra6g0714	335	SMART	mt_12	191	218	IPR003690	GO:0003690\|GO:0006355
	Vra6g0714	335	SMART	mt_12	122	152	IPR003690	GO:0003690\|GO:0006355
	Vra6g0714	335	SMART	mt_12	86	117	IPR003690	GO:0003690\|GO:0006355
	Vra6g0714	335	PANTHER	CGI-12 PROTEIN-RELATED	27	333	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra6g0714	Vra-Chr6	6757239	6759492	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Vra6g0714		mTERF	2.4e-15	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra6g0714	K15032		-	gmx:102667698	284.263