Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0713 ATGAGCACTGTTATCCGCCACCGCCTAAGGCTAAGTCCAAAACTTCTTCTTTATTCTTTCCCCAAACCCTCTTTCTTGTTCTCCACAACCACTTCCGATTCTGTCTCCTTCACCATATCCTACCTCACCAACACCTGCGGATTCACACCAGAGGCTGCACTGAAACTATCCAAACGACTTCGTTTTAACACCGCCCAAAAACCTGATTCCGTCATCTCCTTCTTCCAAACCCACGGTTTCTCCGCCCCCCAGATCCACCGCATCTTCAGCAAATGCCCCGAACTCATGGTATGCGACCCCACCCGAAGGCTTCTCCCCAAATTCCACTTCTTGACCTCCAAAGGTGTTTCTGCATCCGACGTCGTTTCCATTGTCACTAGGAACCCCCGTTTCCTCTGTAGCAGCTTCGAAAACTGCATCTTCCCCACCTTCCAACTCCTCCGAAGGTTCTTTCCCTCCGACCTCAGGGCCCTCACTGTTTTCGTCGTCTTTCCCTCTGTCATCGGCCACTGTCGCTTGGCATCAAACATTGAAAGGTTGCTCAACGCCGGAGTCGCGCACGTCGGCATTCGGTACTTGCTAAACAGTCGGTCTTTTATTCTCTGCTCCAACCTGAGAACCCTTTTGGAGGAAGTGAAGTTGTTGGGGTTTGACCCTCTTAAGGTGACCTTCACTGTTGCCCTTCAGGCCAAAAGTACTGTTTCGAACCCCCTTTGGGATGCCAAAGTCGACGTGTTGAAGAAATGGGGTTGGTCTGAGGATGAGGTTTTAGTTGCGTTTAGGAAACACCCTGCAATGATGCTATGTTCCATGGAGAAACTTGATGCAGTGACGAGGTTTTGGGTGGGTCGGCTTGGATGGGATCGTTCTGAGCTTATTGCTTACCCTTGGTTGTTTAGCTACAGTTTGGACAAAAGACTCGTTCCGAGGGCTTTGGTTCTGCAGTATCTTCTCTCCAGAGGATTGGTGAAGAAGGATGGTAGCATCTCCACACCATTTTGTAACTCTGATGAGGAGTTTCTGAAAAAGTATGTGAAATCTTTCAAGGAGGAAACACCCTGGTTACTAGAGCTATATCAGAAGGGACAGGGAGCATCGTAG 1101 0.4941 MSTVIRHRLRLSPKLLLYSFPKPSFLFSTTTSDSVSFTISYLTNTCGFTPEAALKLSKRLRFNTAQKPDSVISFFQTHGFSAPQIHRIFSKCPELMVCDPTRRLLPKFHFLTSKGVSASDVVSIVTRNPRFLCSSFENCIFPTFQLLRRFFPSDLRALTVFVVFPSVIGHCRLASNIERLLNAGVAHVGIRYLLNSRSFILCSNLRTLLEEVKLLGFDPLKVTFTVALQAKSTVSNPLWDAKVDVLKKWGWSEDEVLVAFRKHPAMMLCSMEKLDAVTRFWVGRLGWDRSELIAYPWLFSYSLDKRLVPRALVLQYLLSRGLVKKDGSISTPFCNSDEEFLKKYVKSFKEETPWLLELYQKGQGAS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0713 366 Gene3D Transcription termination factor 3, mitochondrial 153 352 IPR038538 -
Vra6g0713 366 SMART mt_12 190 218 IPR003690 GO:0003690|GO:0006355
Vra6g0713 366 SMART mt_12 122 152 IPR003690 GO:0003690|GO:0006355
Vra6g0713 366 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Vra6g0713 366 SMART mt_12 289 323 IPR003690 GO:0003690|GO:0006355
Vra6g0713 366 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Vra6g0713 366 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 361 - -
Vra6g0713 366 Pfam mTERF 72 209 IPR003690 GO:0003690|GO:0006355
Vra6g0713 366 Pfam mTERF 241 341 IPR003690 GO:0003690|GO:0006355
Vra6g0713 366 PANTHER CGI-12 PROTEIN-RELATED 28 361 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0713 Vra-Chr6 6743004 6744563 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra6g0713 mTERF 4.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0713 K15032 - var:108336607 328.176